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-rw-r--r--views/model_details.haml266
1 files changed, 144 insertions, 122 deletions
diff --git a/views/model_details.haml b/views/model_details.haml
index 5417a48..8691325 100644
--- a/views/model_details.haml
+++ b/views/model_details.haml
@@ -9,9 +9,8 @@
= "Type:\t"
= type
%br
- - training_dataset = OpenTox::Dataset.find model.model.training_dataset_id
= "Training compounds:\t"
- = training_dataset.data_entries.size
+ = data_entries.count/3
%br
= "Training dataset:\t"
%a{:href=>"#{to("/predict/dataset/#{training_dataset.name}")}"}
@@ -20,134 +19,157 @@
%div.card.bg-light
%div.card-body
%h6.card-title Algorithms:
- Similarity:
- %a{:href=> "http://www.rubydoc.info/gems/lazar/OpenTox%2F#{model.model.algorithms["similarity"]["method"].sub("::", "%2F")}", :rel=>"external"}
- = model.model.algorithms["similarity"]["method"]
- = ", min: #{model.model.algorithms["similarity"]["min"]}"
- %br
- Prediction:
- - if model.model.algorithms["prediction"]["method"] !~ /Caret/
- %a{:href=>"http://www.rubydoc.info/gems/lazar/OpenTox%2F#{model.model.algorithms["prediction"]["method"].sub("::","%2f")}", :rel=>"external"}
- = model.model.algorithms["prediction"]["method"]
- - else
- %a{:href=>"http://www.rubydoc.info/gems/lazar/OpenTox/Algorithm/Caret", :rel=>"external"}
- = model.model.algorithms["prediction"]["method"]
+ %p.card-text
+ Similarity:
+ %a.card-link{:href=> "http://www.rubydoc.info/gems/lazar/OpenTox%2F#{model.model.algorithms["similarity"]["method"].sub("::", "%2F")}", :rel=>"external"}
+ = model.model.algorithms["similarity"]["method"]
+ = ", min: #{model.model.algorithms["similarity"]["min"]}"
+ %br
+ Prediction:
+ - if model.model.algorithms["prediction"]["method"] !~ /Caret/
+ %a.card-link{:href=>"http://www.rubydoc.info/gems/lazar/OpenTox%2F#{model.model.algorithms["prediction"]["method"].sub("::","%2f")}", :rel=>"external"}
+ = model.model.algorithms["prediction"]["method"]
+ - else
+ %a.card-link{:href=>"http://www.rubydoc.info/gems/lazar/OpenTox/Algorithm/Caret", :rel=>"external"}
+ = model.model.algorithms["prediction"]["method"]
- %br
- Descriptors:
- = model.model.algorithms["descriptors"]["method"]+","
- = model.model.algorithms["descriptors"]["type"]
+ %br
+ Descriptors:
+ = model.model.algorithms["descriptors"]["method"]+","
+ = model.model.algorithms["descriptors"]["type"]
%div.card.bg-light
%div.card-body
- if type == "Classification"
- %h6.card-title Independent crossvalidations:
+ %h6.card-text Independent crossvalidations:
- else
- %h6.card-title Independent crossvalidations (-log10 transformed):
- %div.row{:id=>"validations#{model.id}"}
- - crossvalidations.each do |cv|
- %span.col-4
- = "Num folds:\t"
- = cv.folds
- %br
- = "Num instances:\t"
- = cv.nr_instances
- %br
- = "Num unpredicted"
- = cv.nr_unpredicted
- - if model.classification?
- %br
- = "Accuracy:\t"
- = cv.accuracy.round(3) if cv.accuracy
- %br
- = "Weighted accuracy:\t"
- = cv.weighted_accuracy.round(3) if cv.weighted_accuracy
- - if cv.true_rate
- %br
- = "True positive rate:\t"
- = cv.true_rate[cv.accept_values[0]].round(3)
- %br
- = "True negative rate:\t"
- = cv.true_rate[cv.accept_values[1]].round(3)
- - if cv.predictivity
- %br
- = "Positive predictive value:\t"
- = cv.predictivity[cv.accept_values[0]].round(3)
- %br
- = "Negative predictive value:\t"
- = cv.predictivity[cv.accept_values[1]].round(3)
- %p
- - ["confusion_matrix", "weighted_confusion_matrix"].each_with_index do |matrix,idx|
- %b= (idx == 0 ? "Confusion Matrix" : "Weighted Confusion Matrix")
- %div.table-responsive
- %table.table.table-sm.table-borderless
- %tbody
- %tr
- %td
- %td
- %td
- %b actual
- %td
- %td
- %tr
- %td
- %td
- %td active
- %td inactive
- -#%td total
- %tr
- %td
- %b predicted
- %td active
- %td
- =( idx == 1 ? cv.send(matrix)[0][0].round(3) : cv.send(matrix)[0][0])
- %td
- =( idx == 1 ? cv.send(matrix)[0][1].round(3) : cv.send(matrix)[0][1])
- -#%td
- =cv.confusion_matrix[0][0]+cv.confusion_matrix[0][1]
- %tr
- %td
- %td inactive
- %td
- =( idx == 1 ? cv.send(matrix)[1][0].round(3) : cv.send(matrix)[1][0])
- %td
- =( idx == 1 ? cv.send(matrix)[1][1].round(3) : cv.send(matrix)[1][1])
- -#%td
- =cv.confusion_matrix[1][0]+cv.confusion_matrix[1][1]
- -#%tr
- %td
- %td total
- %td
- =cv.confusion_matrix[0][0]+cv.confusion_matrix[1][0]
- %td
- =cv.confusion_matrix[0][1]+cv.confusion_matrix[1][1]
- %td
- -#= "Confusion Matrix:\t"
- -#= cv.confusion_matrix
+ %h6.card-text Independent crossvalidations (-log10 transformed):
+ - crossvalidations.each_with_index do |cv,idx|
+ %div.card.bg-light
+ %div.card-body
+ %h6.card-title= "Nr.#{idx+1} | Num folds:#{cv.folds}"
+ %p.card-text
+ / predictions nr
+ %div.row
+ %div.col-6
+ %h6
+ Predictions number:
+ - cv.nr_predictions.each do |key,value|
+ %div.row
+ %div.col
+ %h6
+ = key
+ %div.col
+ = value
+ - if model.classification?
+ %hr
+ %div.row
+ / accuracy
+ %div.col-6
+ %h6
+ Accuracy:
+ - cv.accuracy.each do |key, value|
+ %div.row
+ %div.col
+ %h6
+ = key
+ %div.col
+ = value.signif(3)
+ %hr
+ / matrixes
+ %div.row
+ - cv.confusion_matrix.each do |key,matrix|
+ %div.col-4
+ %h6
+ Confusion Matrix:
+ %i= key
%br
- %br
- /= "Confidence plot:"
- /%p.plot
- / %img{:src=>"confp#{cv.id}.svg"}
+ %table.table.table-sm.table-borderless.col-4
+ %tbody
+ %tr
+ %td
+ %td
+ %td
+ %h6 actual
+ %td
+ %tr
+ %td
+ %td
+ %td active
+ %td inactive
+ %tr
+ %td
+ %h6 predicted
+ %td active
+ %td
+ = matrix[0][0]
+ %td
+ = matrix[0][1]
+ %tr
+ %td
+ %td inactive
+ %td
+ = matrix[1][0]
+ %td
+ = matrix[1][1]
+ %br
- if model.regression?
- %br
- %a{:href=>"https://en.wikipedia.org/wiki/Root-mean-square_deviation", :rel=>"external"} RMSE:
- = cv.rmse.round(3) if cv.rmse
- %br
- %a{:href=>"https://en.wikipedia.org/wiki/Mean_absolute_error", :rel=>"external"} MAE:
- = cv.mae.round(3) if cv.mae
- %br
- %a{:href=>"https://en.wikipedia.org/wiki/Coefficient_of_determination", :rel=>"external"}= "R"+"<sup>2</sup>"+":"
- = cv.r_squared.round(3) if cv.r_squared
- %br
- /= "Confidence plot:"
- /%p.plot
- / %img{:src=>"/confp#{cv.id}.svg"}
- /%br
- /= "Correlation plot"
- /%p.plot
- / %img{:src=>"/corrp#{cv.id}.svg"}
-
+ %hr
+ %div.row
+ %div.col
+ %h6
+ %a.card-link{:href=>"https://en.wikipedia.org/wiki/Root-mean-square_deviation", :rel=>"external"}
+ RMSE:
+ - cv.rmse.each do |key,value|
+ %div.row
+ %div.col
+ %h6
+ = key
+ %div.col
+ = value.signif(3)
+ %div.col
+ %h6
+ %a.card-link{:href=>"https://en.wikipedia.org/wiki/Mean_absolute_error", :rel=>"external"}
+ MAE:
+ - cv.mae.each do |key,value|
+ %div.row
+ %div.col
+ %h6
+ = key
+ %div.col
+ = value.signif(3)
+ %div.col
+ %h6
+ %a.card-link{:href=>"https://en.wikipedia.org/wiki/Coefficient_of_determination", :rel=>"external"}= "R"+"<sup>2</sup>"+":"
+ - cv.r_squared.each do |key,value|
+ %div.row
+ %div.col
+ %h6.card-title
+ = key
+ %div.col
+ = value.signif(3)
+ %hr
+ %div.row
+ %div.col
+ %h6
+ Within prediction interval:
+ - cv.within_prediction_interval.each do |key,value|
+ %div.row
+ %div.col
+ %h6
+ = key
+ %div.col
+ = value
+ %div.col
+ %h6
+ Out of prediction interval:
+ - cv.out_of_prediction_interval.each do |key,value|
+ %div.row
+ %div.col
+ %h6
+ = key
+ %div.col
+ = value
%div.card.bg-light
%div.card-body
%h6.card-title QMRF:
generated by cgit v1.2.3 (git 2.25.1) at 2024-04-28 12:11:43 +0000