diff options
Diffstat (limited to 'views/neighbors.haml')
| -rw-r--r-- | views/neighbors.haml | 150 |
1 files changed, 57 insertions, 93 deletions
diff --git a/views/neighbors.haml b/views/neighbors.haml index 22dff56..9f60e7c 100644 --- a/views/neighbors.haml +++ b/views/neighbors.haml @@ -4,110 +4,74 @@ / display preordered in table view ; %div.results{:style=>"display:none"} - - count_m = 0 %h3 Neighbors: / tabs div #tabs %ul.nav.nav-tabs.nav-justified{:id=>"neighborTabs", :role=>"tablist"} / each model a tab head ; - - @prediction_models.each do |m| - - count_m += 1 - - m_title = m.title.split("_").last(2)[0] + - @models.each_with_index do |model,i| %li - %a{:href => "#results_#{count_m}", :id => "linkTab#{count_m}", data: {toggle:"tab"}} - = m_title - - count_rs = 0 + %a{:href => "#results_#{i+1}", :id => "linkTab#{i+1}", data: {toggle:"tab"}} + = "#{model.endpoint} (#{model.species})" %div.tab-content / unpack to single arrays - - @predictions.each do |pa| + - @predictions.each_with_index do |prediction,j| / pass model type for significant fragments view - - @type = @model_type[count_rs] - - count_rs += 1 - #results.tab-pane.fade{:id=>"#{count_rs}"} - - pa.each do |p| - / prepare dataset for neighbors table ; - / delete first array which contains prediction ; - / following arrays are the neighbor predictions ; - - @model_uri = p.metadata[RDF::OT.hasSource][0] - - p.data_entries.shift - - p.compounds.shift - - / call the tablesorter plugin ; - / presort by similarity ; - :javascript - $(document).ready(function(){ - $("table##{count_rs}").tablesorter({ - debug: false, - //table: 'ui-widget ui-widget-content ui-corner-all', - //header: 'ui-widget-header ui-corner-all ui-state-default', - theme: "bootstrap", - //widthFixed: true, - //hover: 'ui-state-hover', - //even: 'ui-widget-content', - //odd: 'ui-state-default', - headerTemplate: '{content} {icon}', - widgets: ['zebra', 'columns', 'uitheme'], - headers: {0: {sorter: false}, 3: {sorter: false}}, - sortList: [[2,1]] - }); + #results.tab-pane.fade{:id=>"#{j+1}"} + / prepare dataset for neighbors table ; + / delete first array which contains prediction ; + / following arrays are the neighbor predictions ; + / call the tablesorter plugin ; + / presort by similarity ; + :javascript + $(document).ready(function(){ + $("table##{j+1}").tablesorter({ + debug: false, + theme: "bootstrap", + headerTemplate: '{content} {icon}', + widgets: ['zebra', 'columns', 'uitheme'], + headers: {0: {sorter: false}, 3: {sorter: false}}, + sortList: [[2,1]] }); - - $logger.debug "neighbors compounds:\t#{p.data_entries[0]}\n" - - if p.data_entries[0][2] != nil && p.data_entries[0].size != 3 - -#%h2= "Neighbors: " - - %div.table-responsive - %table.tablesorter{:id=>"#{count_rs}", :style=>"border-style: solid;"} - %thead - %tr - %th{:style =>"vertical-align:middle;"} - Compound - %th{:style =>"vertical-align:middle;"} - Measured Activity - %th{:style =>"vertical-align:middle;"} - Similarity - %th{:style =>"vertical-align:middle;"} - Supporting Information - %info - %tr - %td - %td{:style=>"font-size:x-small;padding:0px;"} - %a.btn.glyphicon.glyphicon-info-sign{:href=>"#neighbors", :title=>"Measured Activity", data: {toggle:"popover", placement:"auto", html:"true", content:"Experimental result(s) from the training dataset."}, :style=>"z-index:auto+10;"} - %td{:style=>"font-size:x-small;padding:0px;"} - %a.btn.glyphicon.glyphicon-info-sign{:href=>"#neighbors", :title=>"Similarity", data: {toggle:"popover", placement:"auto", html:"true", content:"LAZAR calculates activity specific similarities based on the presence of statistically significant fragments. This procedure will <ul><li>consider only those parts of a chemical structure that are relevant for a particular endpoint</li><li>ignore inert parts of the structure</li><li>lead to different similarities, depending on the toxic endpoint Similarities of 1 may be encountered even for structurally dissimilar compounds, because inert parts are ignored.</li></ul>"}, :style=>"z-index:auto+10;"} - %tbody - - count = 0 - - p.compounds.each do |neighbor_compound| - / prevent conversion of nil - - c = p.data_entries[count][2] != nil ? p.data_entries[count][2] : '' - - case c - - when /(false|true|inactive|active)/i - - c = c - - else - /- c = Array.new - - c = p.data_entries[count][2].to_f.round(3) - %tr - %td{:style =>"vertical-align:middle;padding-left:1em;"} - %a.btn.btn-link{:href => "#details#{count_rs}", data: { toggle: "modal", remote: to("/prediction/#{CGI.escape(neighbor_compound.uri)}/details"), :id=>"link#{count_rs}#{count}"}} - %img.blind{:src=>"#{neighbor_compound.uri}/image", :alt=>"no image", :onError=>"this.onerror=null;", :title=>"#{neighbor_compound.smiles}", :width=>"150px"} - %td{:style =>"vertical-align:middle;padding-left:1em;"} - - if c.class == String - = c - - else - = c - %td{:style =>"vertical-align:middle;padding-left:1em;"} - = p.data_entries[count][3] != nil ? p.data_entries[count][3].round(3) : "Not enough similar compounds in training dataset." - %td{:style =>"vertical-align:middle;padding-left:1em;"} - - if @type =~ /classification/i - - if p.data_entries[count][3] != nil - %a.btn.btn-default{:href => "#details#{count_rs}", :id=>"link#{count_rs}#{count}sf", data: { toggle: "modal", remote: to("/prediction/#{CGI.escape(@model_uri)}/#{@type}/#{CGI.escape(neighbor_compound.uri)}/significant_fragments")}} Significant Fragments - - if @type =~ /regression/i - - if p.data_entries[count][3] != nil - %a.btn.btn-default{:href => "#details#{count_rs}", :id=>"link#{count_rs}#{count}sf", data: { toggle: "modal", remote: to("/prediction/#{CGI.escape(@model_uri)}/#{@type}/#{CGI.escape(neighbor_compound.uri)}/significant_fragments")}} Descriptors - - count += 1 - - else - %span.btn.btn-default.disabled Not enough similar compounds in training dataset + }); + - if prediction[:neighbors].size > 0 + + %div.table-responsive + %table.tablesorter{:id=>"#{j+1}", :style=>"border-style: solid;"} + %thead + %tr + %th{:style =>"vertical-align:middle;"} + Compound + %th{:style =>"vertical-align:middle;"} + Measured Activity + %th{:style =>"vertical-align:middle;"} + Similarity + / %th{:style =>"vertical-align:middle;"} + / Supporting Information + %info + %tr + %td + %td{:style=>"font-size:x-small;padding:0px;"} + %a.btn.glyphicon.glyphicon-info-sign{:href=>"#neighbors", :title=>"Measured Activity", data: {toggle:"popover", placement:"auto", html:"true", content:"Experimental result(s) from the training dataset."}, :style=>"z-index:auto+10;"} + %td{:style=>"font-size:x-small;padding:0px;"} + %a.btn.glyphicon.glyphicon-info-sign{:href=>"#neighbors", :title=>"Similarity", data: {toggle:"popover", placement:"auto", html:"true", content:"LAZAR calculates activity specific similarities based on the presence of statistically significant fragments. This procedure will <ul><li>consider only those parts of a chemical structure that are relevant for a particular endpoint</li><li>ignore inert parts of the structure</li><li>lead to different similarities, depending on the toxic endpoint Similarities of 1 may be encountered even for structurally dissimilar compounds, because inert parts are ignored.</li></ul>"}, :style=>"z-index:auto+10;"} + / %td + %tbody + - prediction[:neighbors].each_with_index do |neighbor,count| + %tr + %td{:style =>"vertical-align:middle;padding-left:1em;"} + %a.btn.btn-link{:href => "#details#{j+1}", data: { toggle: "modal", remote: to("/prediction/#{CGI.escape(neighbor[0].to_s)}/details"), :id=>"link#{j+1}#{count}"}} + = Compound.find(neighbor[0]).svg + %td{:style =>"vertical-align:middle;padding-left:1em;"} + = neighbor[2].collect{|n| '%.2e' % n}.join ", " + %td{:style =>"vertical-align:middle;padding-left:1em;"} + / TODO differentiate between no neighbors found and compound found in dataset, display neighbors for compounds in dataset? + = neighbor[1] != nil ? neighbor[1] : "Not enough similar compounds in training dataset." - %div.modal.fade{:id=>"details#{count_rs}", :role=>"dialog"} + - else + %span.btn.btn-default.disabled Not enough similar compounds in training dataset + + %div.modal.fade{:id=>"details#{j+1}", :role=>"dialog"} %div.modal-dialog.modal-lg %div.modal-content |