diff options
Diffstat (limited to 'views/neighbors.haml')
| -rw-r--r-- | views/neighbors.haml | 42 |
1 files changed, 8 insertions, 34 deletions
diff --git a/views/neighbors.haml b/views/neighbors.haml index 32b8389..9c12be9 100644 --- a/views/neighbors.haml +++ b/views/neighbors.haml @@ -1,38 +1,19 @@ -/ unpacks multi prediction array ; -/ prepare it for neighbors ; -/ align single prediction to endpoint ; -/ display preordered in table view ; - %div.results %h3 Neighbors: / tabs div #tabs %ul.nav.nav-tabs.nav-justified{:id=>"neighborTabs", :role=>"tablist"} - / each model a tab head ; - / hash for predictionFeature - - predictionFeature = {} - @models.each_with_index do |model,i| / get predictionFeature type - m = Model::Lazar.find model.model_id.to_s - - predFeature = Feature.find m.prediction_feature_id.to_s - / define feature type (numeric : nominal) - - predFeatureType = (predFeature.numeric? ? "numeric" : "nominal") - / use prediction feature id for neighbor compound features - - predFeatureId = m.prediction_feature_id.to_s - - predictionFeature[i] = {"id" => predFeatureId, "type" => predFeatureType} %li{:class => ("active" if i == 0)} %a{:href => "#results_#{i+1}", :id => "linkTab#{i+1}", data: {toggle:"tab"}} = "#{model.endpoint} (#{model.species})" %div.tab-content - / unpack to single arrays - @predictions.each_with_index do |prediction,j| - / pass model type for significant fragments view + - if prediction.dimension > 0 + - prediction = prediction[0] #results.tab-pane{:id=>"#{j+1}", :class => ("active" if j == 0)} - / prepare dataset for neighbors table ; - / delete first array which contains prediction ; - / following arrays are the neighbor predictions ; - / call the tablesorter plugin ; - / presort by similarity ; :javascript $(document).ready(function(){ $("table##{j+1}").tablesorter({ @@ -58,7 +39,7 @@ widthFixed: false }); }); - - if prediction[:neighbors].size > 0 + - if prediction[:neighbors] %div.table-responsive %table{:id=>"#{j+1}", :style=>"border-style: solid;"} %thead @@ -70,9 +51,7 @@ %a.btn.glyphicon.glyphicon-info-sign{:href=>"javascript:void(0)", :title=>"Measured Activity", :tabindex=>"0", data: {trigger:"focus", container:"body", toggle:"popover", placement:"auto", html:"true", content:"Experimental result(s) from the training dataset."}, :style=>"z-index:auto+10;"} %th.sorter-false{:style =>"vertical-align:middle;"} Similarity - %a.btn.glyphicon.glyphicon-info-sign{:href=>"javascript:void(0)", :title=>"Similarity", :tabindex=>"0", data: {trigger:"focus", container:"body", toggle:"popover", placement:"auto", html:"true", content:"<a href=\"https://en.wikipedia.org/wiki/Jaccard_index\">Tanimoto/Jaccard</a> similarity based on <a href=\"https://openbabel.org/docs/dev/FileFormats/MolPrint2D_format.html\">Molprint2D</a> fingerprints."}, :style=>"z-index:auto+10;"} - / %th{:style =>"vertical-align:middle;"} - / Supporting Information + %a.btn.glyphicon.glyphicon-info-sign{:href=>"javascript:void(0)", :title=>"Similarity", :tabindex=>"0", data: {trigger:"focus", container:"body", toggle:"popover", placement:"auto", html:"true", content:"<a alt=\"Link opens in new window.\" title=\"Link opens in new window.\" target=\"_blank\" href=\"https://en.wikipedia.org/wiki/Jaccard_index\">Tanimoto/Jaccard</a> similarity based on <a alt=\"Link opens in new window.\" title=\"Link opens in new window.\" target=\"_blank\" href=\"https://openbabel.org/docs/dev/FileFormats/MolPrint2D_format.html\">Molprint2D</a> fingerprints."}, :style=>"z-index:auto+10;"} %tbody - type = @model_types[j] - unit = @models[j].unit @@ -81,17 +60,16 @@ / Compound - c = Compound.find(neighbor) %td{:style =>"vertical-align:middle;padding-left:1em;width:50%;"} - /%a.btn.btn-link{:href => "#details#{j+1}", data: { toggle: "modal", remote: to("/prediction/#{CGI.escape(neighbor["_id"])}/details"), :id=>"link#{j+1}#{count}"}} - %p= c.svg + = c.svg %p= c.smiles / Measured Activity %td{:style =>"vertical-align:middle;padding-left:1em;width:20%;white-space:nowrap;"} - if neighbor[:measurement].is_a?(Array) - = (type == "Regression") ? neighbor[:measurement].collect{|value| "#{value.delog10} (#{unit})</br>#{c.mmol_to_mg(value.delog10)} #{unit =~ /mmol\/L/ ? "(mg/L)" : "(mg/kg_bw/day)"}"}.join("</br>") : neighbor[:measurement].join(", ") + = (type == "Regression") ? neighbor[:measurement].collect{|value| "#{value.delog10.signif(3)} (#{unit})</br>#{c.mmol_to_mg(value.delog10).signif(3)} #{unit =~ /mmol\/L/ ? "(mg/L)" : "(mg/kg_bw/day)"}"}.join("</br>") : neighbor[:measurement].join(", ") - else - = (type == "Regression") ? "#{neighbor[:measurement].delog10} (#{unit})</br>#{c.mmol_to_mg(neighbor[:measurement].delog10)} #{(unit =~ /\b(mol\/L)\b/) ? "(mg/L)" : "(mg/kg_bw/day)"}" : neighbor[:measurement] - + - if !neighbor[:measurement].nil? + = (type == "Regression") ? "#{neighbor[:measurement].delog10.signif(3)} (#{unit})</br>#{c.mmol_to_mg(neighbor[:measurement].delog10).signif(3)} #{(unit =~ /\b(mmol\/L)\b/) ? "(mg/L)" : "(mg/kg_bw/day)"}" : neighbor[:measurement] / Similarity = tanimoto %td{:style =>"vertical-align:middle;padding-left:1em;width:20%;"} = neighbor[:similarity].round(3) @@ -100,7 +78,3 @@ %span.btn.btn-default.disabled = "Not enough similar compounds in training dataset" - %div.modal.fade{:id=>"details#{j+1}", :role=>"dialog"} - %div.modal-dialog.modal-lg - %div.modal-content - |