diff options
Diffstat (limited to 'views/predict.haml')
| -rw-r--r-- | views/predict.haml | 111 |
1 files changed, 7 insertions, 104 deletions
diff --git a/views/predict.haml b/views/predict.haml index bd430a6..118c4d4 100644 --- a/views/predict.haml +++ b/views/predict.haml @@ -1,35 +1,6 @@ %link{ :href=>"/jsme/jsa.css", :rel=>"stylesheet"} %script{:src=>"/jsme/jsme.nocache.js"} :javascript - function callTask(url) { - var result=""; - $.ajax({ - url: url, - async: false, - success:function(data) { - var response = data.match(/Completed\s.*\./)[0]; - var arr = response.split(" "); - result = arr[1].replace(/"/g, ""); - } - }); - return result; - }; - // form function - function progress($element, url) { - $element.width("2%"); - $element.show(); - var timer = setInterval(function(){ - var percent = callTask(url); - if(percent == 100.0){ - var next = percent; - clearInterval(timer); - } - else { - var next = percent; - } - $element.width(next+"%"); - }, 3000); - }; function checksmiles () { if (document.form.identifier.value == "") { alert("Please draw or insert a chemical structure."); @@ -48,7 +19,6 @@ }); if (checked == false){ alert("Please select an endpoint."); - $('.progress-bar').hide(); return false; }; return true; @@ -67,8 +37,6 @@ }; // init task for progress -- task_uri = OpenTox::Task.task_uri -- OpenTox::Task.run("Predict compound.", "#{$lazar[:uri]}", task_uri)do;end // whole site content needs to be in one form. Input and checkboxes are proofed by js functions. %form{:name => "form", :action => to('/predict'), :method => "post", :enctype => "multipart/form-data", :onsubmit => "return !!(checksmiles() & checkboxes())" } @@ -102,74 +70,14 @@ }); #models - - @detail_count = 0 - @endpoints.each do |endpoint| %div - %b= endpoint[0].split("#").last.gsub("_", " ").gsub(/\"|\]/, "")+" :" - - @models.each do |model| - - if endpoint == model.type.select{|e| e =~ /Endpoint/} - - model_title = model.title.split("_").last(2)[0] - - model_t = model.title.gsub("_", " ") - - @detail_count +=1 - %div{:id => model_title} - %input{:type => "checkbox", :name => "selection[#{model.uri}]", :id => "selection[#{model_title}]", :value => true, :disabled => false} - %label{:for => "selection[#{model_title}]"} - = model_t - %a.btn.btn-default.btn-xs{:href=>"#details", :id => "linkDetails#{model_title}", :title=>"#{model_title} details", :style=>"font-size:small;"} - Details | Validation - - :javascript - $("a#linkDetails#{model_title}").click(function () { - $("#details_#{@detail_count}").toggle(); - //document.location = document.location + "#" + "details"; - }); - #details{:id => "#{@detail_count}", :style => "display:none;"} - %div.panel{:style=>"padding:0.5em;"} - %div.row - %div.col-md-6 - %h3 Model Details: - %p - Algorithm: LAZAR - - model.type.to_s =~ /regression/i ? type = "regression" : type = "classification" - - @model_type = type - %p - = "Type: "+type - - training_dataset = OpenTox::Dataset.new "#{model[RDF::OT.trainingDataset]}" - - training_compounds = training_dataset.compounds.size.to_s - %p - Training compounds: - = training_compounds - %p - Descriptors: - - if type == "regression" - %a{:href=>"https://services.in-silico.ch/algorithm/descriptor/physchem/list", :title=>"link opens in new window.", :target=>"_blank"} Physico-chemical (PC) properties - - else - %a{:href=>"http://www.maunz.de/libfminer2-bbrc-doc/", :title=>"link opens in new window.", :target=>"_blank"} Fminer backbone refinement classes - %p - Model: - %a.btn{:href=>"#{to("/predict/#{CGI.escape(model.uri)}")}", :title=>"download"} - rdf - %span.glyphicon.glyphicon-download-alt - %p - Feature Dataset: - %a.btn{:href=>"#{to("/predict/#{CGI.escape(model[RDF::OT.featureDataset])}")}", :title=>"download"} - rdf - %span.glyphicon.glyphicon-download-alt - -#%a{:href=>"#{to("/predict/#{CGI.escape(model[RDF::OT.featureDataset])}")}/sdf", :title=>"download"} sdf - %p - Training Dataset: - %a.btn{:href=>"#{to("/predict/#{CGI.escape(model[RDF::OT.trainingDataset])}")}", :title=>"link opens in new window."} - rdf - %span.glyphicon.glyphicon-download-alt - -#%a{:href=>"#{to("/predict/#{CGI.escape(model[RDF::OT.trainingDataset])}/sdf")}", :title=>"link opens in new window."} sdf - - unless model.metadata[RDF::OT.crossValidation].nil? - %div.col-md-6 - %h3 Validation: - %a.btn.btn-info.btn-xs{:href => "#{model.metadata[RDF::OT.crossValidation][0]}", :title=>"link opens in new window.", :target=>"_blank"} - Detailed report link - %p - - @cv = OpenTox::Validation.find "#{model.metadata[RDF::OT.crossValidation][0]+"/statistics"}" - = haml :validation, :layout => false, :validation => @cv, :model_type => @model_type + %b= endpoint + - @models.select{|m| m.endpoint == endpoint}.each do |model| + %div{:id => model.id} + %input{:type => "checkbox", :name => "selection[#{model.id}]", :id => "selection[#{model.id}]", :value => true, :disabled => false} + %label{:for => "selection[#{model.id}]"} + = model.species %p @@ -179,9 +87,4 @@ %h2 3. Predict %div.col-md-10 - %input.btn.btn-warning.h2{ :type => "submit", :id => "submit", :value=>">>", :onclick => "(progress($('.progress-bar'),'#{task_uri}') & getsmiles())"} - %input{:type => "hidden", :name => "task_uri", :value => "#{task_uri}"} - %div.row - %div.col-md-12 - %div.progress - %div.progress-bar.progress-bar-striped.active{:role=>"progressbar", aria: { valuemin: 0, valuemax: 100}, :style=>"width:0;"} + %input.btn.btn-warning.h2{ :type => "submit", :id => "submit", :value=>">>", :onclick => "getsmiles()"} |