diff options
Diffstat (limited to 'views/prediction.haml')
| -rw-r--r-- | views/prediction.haml | 121 |
1 files changed, 30 insertions, 91 deletions
diff --git a/views/prediction.haml b/views/prediction.haml index 764adb1..8d9e235 100644 --- a/views/prediction.haml +++ b/views/prediction.haml @@ -1,37 +1,25 @@ :javascript - // increase body width if more than 2 models selected - window.onload = function(){ - var plusSize = ("#{@predictions.size}" > 2 ) ? ("#{@predictions.size}" * 100) : 0; - var width = $(window).width() + plusSize; - $("body").width(width); - }; -.predictions - .back - %h1 - %img{:src=>"/images/arrow_left_float.png", :alt=>"<"} - %a{:href => to('/predict')} New Prediction + $(document).ready(function(){ + $('[data-toggle="popover"]').popover(); + $(".modal").on('hidden.bs.modal', function() { + $(this).removeData('bs.modal'); + }); + }); +%div.well + %a.btn.btn-primary{:href => to('/predict')} New Prediction / displays all prediction result in first table - .overview - %table{:width=>"100%", :cellspacing=>"1", :id=>"overview"} + %div.table-responsive + %table.table.table-bordered{:id=>"overview"} %thead %tr - %caption - %h2 Prediction Results: + %h2 Prediction Results: %tbody %tr %td{:id=>"compound", :style=>"vertical-align:top;"} - %a{:href => to("/prediction/#{CGI.escape(@compound.uri)}/details"), :id=>"linkCompound", :target=>"details_overview"} - Names and synonyms > - %img{:src=>"#{@compound.uri}/image", :alt=>"Compound image not available", :title=>"#{@compound.smiles}", :width=>"150", :height=>"150"} - %p - :javascript - $(function() { - $("a#linkCompound").on('click', function(e) { - $('#iframe_overview').bPopup(); - }); - }); + %a.btn.btn-link{:href => to("/prediction/#{CGI.escape(@compound.uri)}/details"), :id=>"linkCompound", data: { toggle: "modal", target:"#detailsTop"}} + %img{:src=>"#{@compound.uri}/image", :alt=>"no image", :title=>"#{@compound.smiles}", :width=>"150", :height=>"150"} - count=0 - @predictions.each do |pa| / unpack to single array/prediction @@ -70,31 +58,7 @@ - result = (c != '' ? c.round(3) : "No prediction result.") = result - confidence = (p.data_entries[0][1] != nil && p.data_entries[0][1] != 0.0) ? p.data_entries[0][1].round(2) : "--" - - / title must be empty for tooltip - %a{:href=>"#result", :title=>"", :id=>"result"} - %img{:src=>"/images/info_white.png"} - .tooltip{:style=>"font-weight: normal; font-size: 1em; width: 50%; text-align: left;"} - %dt - Result - %dd - %code{:style=>"font-size:x-large;"} lazar - calculates searches the training dataset for similar compounds (neighbors) - and calculates the prediction from their measured activities. - %code{:style=>"font-size:x-large;"} lazar - calculates predictions using - %ul - %li a majority vote (weighted by compound similarity) for - %em classification - ( - %a{:href=>"http://www.frontiersin.org/Journal/10.3389/fphar.2013.00038/abstract", :target=>"_blank"} original publication - ) - %li a local QSAR model based on neighbors for - %em regression - ( - %a{:href=>"http://www.frontiersin.org/Journal/10.3389/fphar.2013.00038/abstract", :target=>"_blank"} original publication - ) - Please keep in mind that predictions are based on the measured activities of neighbors. + %a.btn.glyphicon.glyphicon-info-sign{:href=>"#", :title=>"Result", data: {toggle:"popover", placement:"left", trigger:"focus", html:"true", content:"LAZAR calculates searches the training dataset for similar compounds (neighbors) and calculates the prediction from their measured activities. LAZAR calculates predictions using <ul><li>a majority vote (weighted by compound similarity) for<br /><b>classification</b> (<a href='http://www.frontiersin.org/Journal/10.3389/fphar.2013.00038/abstract', target='_blank'>original publication</a>) </li><li>a local QSAR model based on neighbors for<br /><b>regression</b> (<a href='http://www.frontiersin.org/Journal/10.3389/fphar.2013.00038/abstract', target='_blank'</h>original publication</a>) </li></ul>Please keep in mind that predictions are based on the measured activities of neighbors."}} - @cv = OpenTox::Validation.find @prediction_models[count].metadata[RDF::OT.crossValidation][0]+"/statistics" #unless @prediction_models[count].title.include?("Mutagenicity") - unless @model_type[count] == "regression" %br @@ -104,54 +68,27 @@ - prob = @cv.probabilities( confidence, result )[:probs][result]*100 = "#{prob.round(1)} %" %p - .confidence - %b Confidence: - = confidence - / title must be empty for tooltip - %a{:href=>"#confidence", :title=>"", :id=>"confidence"} - %img{:src=>"/images/info_white.png"} - .tooltip{:style=>"font-weight: normal; font-size: 1em; width: 50%; text-align: left;"} - %dt - Confidence - %dd - Indicates the applicability domain of a model. - Predictions with a high confidence can be expected to be more reliable than predictions - with low confidence. - Confidence values may take any value between 0 and 1. - For most models confidence > 0.025 is a sensible (hard) cutoff to distinguish between - reliable and unreliable predictions. - - + %b Confidence: + = confidence + %a.btn.glyphicon.glyphicon-info-sign{:href=>"#", :title=>"Confidence", data: {toggle:"popover", placement:"left", trigger:"focus", html:"true", content:"Indicates the applicability domain of a model. Predictions with a high confidence can be expected to be more reliable than predictions with low confidence. Confidence values may take any value between 0 and 1. For most models confidence > 0.025 is a sensible (hard) cutoff to distinguish between reliable and unreliable predictions."}} %p /TODO add tooltip for significant ftagments and descriptors - if @model_type[count] =~ /classification/i && (p.data_entries[0][1] != nil && p.data_entries[0][1] != 0.0) / Significant fragments: - %a{:href => to("/prediction/#{CGI.escape(@model_uri)}/#{@model_type[count]}/#{CGI.escape(@compound.uri)}/fingerprints"), :id=>"linkPredictionSf", :title=>"", :target=>"details_overview"}Significant fragments > - :javascript - $(function() { - $("a#linkPredictionSf").on('click', function(e) { - $('#iframe_overview').bPopup(); - }); - }); + %a.btn.btn-primary.btn-sm{:id=>"linkSigFragments", :href => to("/prediction/#{CGI.escape(@model_uri)}/#{@model_type[count]}/#{CGI.escape(@compound.uri)}/fingerprints"), data: { toggle: "modal", target:"#detailsTop"}} Significant fragments - if @model_type[count] =~ /regression/i && (p.data_entries[0][1] != nil && p.data_entries[0][1] != 0.0) / Descriptors - %a{:href => to("/prediction/#{CGI.escape(@model_uri)}/#{@model_type[count]}/#{CGI.escape(@compound.uri)}/fingerprints"), :id=>"linkPredictionSf", :target=>"details_overview"} Descriptors > - :javascript - $(function() { - $("a#linkPredictionSf").on('click', function(e) { - $('#iframe_overview').bPopup(); - }); - }); + %a.btn.btn-primary.btn-sm{:id=>"linkDescriptors", :href => to("/prediction/#{CGI.escape(@model_uri)}/#{@model_type[count]}/#{CGI.escape(@compound.uri)}/fingerprints"), data: { toggle: "modal", target:"#detailsTop"}} Descriptors %p - if c != '' - %a{:href=> "#tabs", :id=>"link#{count}"} - %b Neighbors > - :javascript - $("a#link#{count}").click(function () { - $(".results").show(); - document.getElementById('tabs').focus(); - $("#tabs").tabs({ active: "#{count}" }); - }); + %a.btn.btn-warning.btn-sm{:href=> "#tabs", :id=>"link#{count}"} + Neighbors + :javascript + $("a#link#{count}").click(function () { + $(".results").show(); + document.getElementById('tabs').focus(); + $("#tabs").tabs({ active: "#{count}" }); + }); %p - count+=1 - else # database hit @@ -166,4 +103,6 @@ / always show the neighbors table, message is given there = haml :neighbors, :layout => false, :model_type => @model_type -%iframe{:id=>"iframe_overview", :name=>"details_overview", :height=>"95%", :width=>"95%", :style=>"display:none;border:0px"} +%div.modal.fade{:id=>"detailsTop", :role=>"dialog"} + %div.modal-dialog.modal-lg + %div.modal-content |