From 395506ca3fe4daa5689fd197e57f7ab944beb1d7 Mon Sep 17 00:00:00 2001
From: gebele <gebele@in-silico.ch>
Date: Thu, 28 Jun 2018 14:35:20 +0000
Subject: updated API and request path handling

---
 api/api.json   | 95 +++++++++++++++++++++++++++++++++++++++++++++++++++++++---
 application.rb | 53 ++++++++++++++++----------------
 2 files changed, 118 insertions(+), 30 deletions(-)

diff --git a/api/api.json b/api/api.json
index 9976569..6aa95ad 100644
--- a/api/api.json
+++ b/api/api.json
@@ -19,7 +19,7 @@
     "title": "Lazar & Nano-Lazar REST Service",
     "contact": {
       "name": "in silico toxicology gmbh",
-      "email": "info@in-silico.ch",
+      "email": "service@in-silico.ch",
       "url": "https://in-silico.ch"
     },
     "license": {
@@ -268,8 +268,34 @@
         ],
         "responses": {
           "200": {
-            "$ref": "#/components/responses/200"
-          },
+            "description": "OK",
+            "content": {
+              "application/json": {
+                "x-orn:returns": "application/json",
+                "schema": {
+                  "x-orn:property": "InChI",
+                  "type": "string",
+                  "example": "InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H"
+                }
+              },
+              "text/csv": {
+                "x-orn:returns": "text/csv",
+                "schema": {
+                  "x-orn:property": "InChI",
+                  "type": "string",
+                  "example": "InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H"
+                }
+              },
+              "application/csv": {
+                "x-orn:returns": "text/csv",
+                "schema": {
+                  "x-orn:property": "InChI",
+                  "type": "string",
+                  "example": "InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H"
+                }
+              }
+	    }
+	  },
           "400": {
             "$ref": "#/components/responses/400"
           },
@@ -813,10 +839,71 @@
         ],
         "responses": {
           "200": {
-            "$ref": "#/components/responses/200"
+            "description": "OK",
+            "content": {
+              "application/json": {
+                "x-orn:returns": "application/json",
+                "schema": {
+                  "x-orn:property": "InChI",
+                  "type": "string",
+                  "example": "InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H"
+                }
+              },
+              "chemical/x-daylight-smiles": {
+                "x-orn:returns": "chemical/x-daylight-smiles",
+                "schema": {
+                  "x-orn:property": "InChI",
+                  "type": "string",
+                  "example": "InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H"
+                }
+              },
+              "chemical/x-inchi": {
+                "x-orn:returns": "chemical/x-inchi",
+                "schema": {
+                  "x-orn:property": "InChI",
+                  "type": "string",
+                  "example": "InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H"
+                }
+              },
+              "chemical/x-mdl-sdfile": {
+                "x-orn:returns": "chemical/x-mdl-sdfile",
+                "schema": {
+                  "x-orn:property": "InChI",
+                  "type": "string",
+                  "example": "InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H"
+                }
+              },
+              "image/png": {
+                "x-orn:returns": "image/png",
+                "schema": {
+                  "x-orn:property": "InChI",
+                  "type": "string",
+                  "example": "InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H"
+                }
+              },
+              "image/svg+xml": {
+                "x-orn:returns": "image/svg+xml",
+                "schema": {
+                  "x-orn:property": "InChI",
+                  "type": "string",
+                  "example": "InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H"
+                }
+              },
+              "text/plain": {
+                "x-orn:returns": "text/plain",
+                "schema": {
+                  "x-orn:property": "InChI",
+                  "type": "string",
+                  "example": "InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H"
+                }
+              }
+            }
           },
           "400": {
             "$ref": "#/components/responses/400"
+          },
+          "500": {
+            "$ref": "#/components/responses/500"
           }
         }
       }
diff --git a/application.rb b/application.rb
index 96e564b..ebcb0af 100644
--- a/application.rb
+++ b/application.rb
@@ -2,6 +2,20 @@ require 'rdiscount'
 require_relative 'qmrf_report.rb'
 include OpenTox
 
+[
+  "aa.rb",
+  "api.rb",
+  "compound.rb",
+  "dataset.rb",
+  "feature.rb",
+  "model.rb",
+  "nanoparticle.rb",
+  "report.rb",
+  "substance.rb",
+  "swagger.rb",
+  "validation.rb"
+].each{ |f| require_relative "./lib/#{f}" }
+
 
 configure :production do
   $logger = Logger.new(STDOUT)
@@ -15,18 +29,19 @@ end
 
 before do
   paths = [
-  "/aa",
-  "/api",
-  "/compound",
-  "/dataset",
-  "/feature",
-  "/model",
-  "/nanoparticle",
-  "/report",
-  "/substance",
-  "/swagger",
-  "/validation"]
-  if paths.include?(request.path)
+  "/",
+  "aa",
+  "api",
+  "compound",
+  "dataset",
+  "feature",
+  "model",
+  "nanoparticle",
+  "report",
+  "substance",
+  "swagger",
+  "validation"]
+  if request.path == "/" || paths.include?(request.path.split("/")[1])
     @accept = request.env['HTTP_ACCEPT']
     response['Content-Type'] = @accept
   else
@@ -50,20 +65,6 @@ options "*" do
   200
 end
 
-[
-  "aa.rb",
-  "api.rb",
-  "compound.rb",
-  "dataset.rb",
-  "feature.rb",
-  "model.rb",
-  "nanoparticle.rb",
-  "report.rb",
-  "substance.rb",
-  "swagger.rb",
-  "validation.rb"
-].each{ |f| require_relative "./lib/#{f}" }
-
 get '/predict/?' do
   @models = OpenTox::Model::Validation.all
   @models = @models.delete_if{|m| m.model.name =~ /\b(Net cell association)\b/}
-- 
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