From 878f014ec6cc808af99af5045bcc1a1143cab8d9 Mon Sep 17 00:00:00 2001
From: gebele <gebele@in-silico.ch>
Date: Thu, 5 Jul 2018 10:38:55 +0000
Subject: updated with endpoint list; refined error handling; refined
 prediction input

---
 lib/endpoint.rb | 23 +++++++++++++++++++++++
 lib/model.rb    |  2 +-
 2 files changed, 24 insertions(+), 1 deletion(-)
 create mode 100644 lib/endpoint.rb

(limited to 'lib')

diff --git a/lib/endpoint.rb b/lib/endpoint.rb
new file mode 100644
index 0000000..ef39787
--- /dev/null
+++ b/lib/endpoint.rb
@@ -0,0 +1,23 @@
+# Get a list of all endpoints
+# @param [Header] Accept one of text/uri-list,
+# @return [text/uri-list] list of all prediction models
+get "/endpoint/?" do
+  models = Model::Validation.all
+  endpoints = models.collect{|m| m.endpoint}.uniq
+  case @accept
+  when "text/uri-list"
+    return endpoints.join("\n") + "\n"
+  when "application/json"
+    return endpoints.to_json
+  else
+    bad_request_error "Mime type #{@accept} is not supported."
+  end
+end
+
+get "/endpoint/:endpoint/?" do
+  models = Model::Validation.where(endpoint: params[:endpoint])
+  list = []
+  models.each{|m| list << {m.species => uri("/model/#{m.id}")} }
+  not_found_error "Endpoint: #{params[:endpoint]} not found." if models.blank?
+  return list.to_json
+end
diff --git a/lib/model.rb b/lib/model.rb
index 9fbd90f..3764ee2 100644
--- a/lib/model.rb
+++ b/lib/model.rb
@@ -27,7 +27,7 @@ end
 
 post "/model/:id/?" do
   identifier = params[:identifier].split(",")
-  compounds = identifier.collect{ |i| Compound.from_smiles i.strip }
+  compounds = identifier.collect{ |i| Compound.from_smiles i.strip.gsub(/\A"|"\Z/,'') }
   model = Model::Validation.find params[:id]
   batch = {}
   compounds.each do |compound|
-- 
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