From 512458e2489c8cc12a9d539d8895c1802d7b081a Mon Sep 17 00:00:00 2001
From: gebele <gebele@in-silico.ch>
Date: Wed, 20 Apr 2016 14:12:03 +0000
Subject: adopted changes from CH on the master branch

---
 views/neighbors.haml  | 4 +++-
 views/prediction.haml | 1 +
 2 files changed, 4 insertions(+), 1 deletion(-)

(limited to 'views')

diff --git a/views/neighbors.haml b/views/neighbors.haml
index c94331a..3014255 100644
--- a/views/neighbors.haml
+++ b/views/neighbors.haml
@@ -75,9 +75,11 @@
                   %tr
                     %td
                     %td{:style=>"font-size:x-small;padding:0px;"}
+                      / measured activity
                       %a.btn.glyphicon.glyphicon-info-sign{:href=>"#neighbors", :title=>"Measured Activity", :tabindex=>"0", data: {trigger:"focus", container:"body", toggle:"popover", placement:"left", html:"true", content:"Experimental result(s) from the training dataset."}, :style=>"z-index:auto+10;"}
                     %td{:style=>"font-size:x-small;padding:0px;"}
-                      %a.btn.glyphicon.glyphicon-info-sign{:href=>"#neighbors", :title=>"Similarity", :tabindex=>"0", data: {trigger:"focus", container:"body", toggle:"popover", placement:"left", html:"true", content:"LAZAR calculates activity specific similarities based on the presence of statistically significant fragments. This procedure will <ul><li>consider only those parts of a chemical structure that are relevant for a particular endpoint</li><li>ignore inert parts of the structure</li><li>lead to different similarities, depending on the toxic endpoint Similarities of 1 may be encountered even for structurally dissimilar compounds, because inert parts are ignored.</li></ul>"}, :style=>"z-index:auto+10;"}
+                      / similarity
+                      %a.btn.glyphicon.glyphicon-info-sign{:href=>"#neighbors", :title=>"Similarity", :tabindex=>"0", data: {trigger:"focus", container:"body", toggle:"popover", placement:"left", html:"true", content:"<a href=\"https://en.wikipedia.org/wiki/Jaccard_index\">Tanimoto/Jaccard</a> similarity based on <a href=\"https://openbabel.org/docs/dev/FileFormats/Molprint2D_format.html\">Molprint2D</a> fingerprints."}, :style=>"z-index:auto+10;"}
                     / %td
                 %tbody
                   - type = @model_types[j]
diff --git a/views/prediction.haml b/views/prediction.haml
index 89c33d6..4a2877e 100644
--- a/views/prediction.haml
+++ b/views/prediction.haml
@@ -49,6 +49,7 @@
                 %b Prediction:
                 = (type == "Regression") ? "#{'%.2e' % prediction[:value]} (#{unit}) | #{'%.2e' % @compound.mmol_to_mg(prediction[:value])} #{(unit == "mmol/L") ? "(mg/L)" : "(mg/kg_bw/day)"}" : prediction[:value]
                 / tabindex=0 seems the best fix for FF|S browsers on OSX better than trigger="click focus" which ends up in double click for FF.
+                / prediction popover
                 %a.btn.glyphicon.glyphicon-info-sign{:href=>"#", :title=>"Prediction", :tabindex=>"0", data: {trigger:"focus", toggle:"popover", placement:"left", html:"true", content:"LAZAR calculates searches the training dataset for similar compounds (neighbors) and calculates the prediction from their measured activities. LAZAR calculates predictions using <ul><li>a majority vote (weighted by compound similarity) for<br /><b>classification</b> (<a href='http://www.frontiersin.org/Journal/10.3389/fphar.2013.00038/abstract', target='_blank'>original publication</a>) </li><li>a local QSAR model based on neighbors for<br /><b>regression</b> (<a href='http://www.frontiersin.org/Journal/10.3389/fphar.2013.00038/abstract', target='_blank'</h>original publication</a>) </li></ul>Please keep in mind that predictions are based on the measured activities of neighbors."}}
                 %br
                 - if type == "Regression"
-- 
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