:javascript function callTask(url) { var result=""; $.ajax({ url: url, async: false, success:function(data) { var response = data.match(/Completed\s.*\./)[0]; var arr = response.split(" "); result = arr[1].replace(/"/g, ""); } }); return result; }; function progressBarWidth(p,w){ percent = p * w / 100; return percent ; }; // form function function progress($element, url) { $element.show(); var fullWidth = $element.width(); var timer = setInterval(function(){ var percent = callTask(url); if(percent == 100.0){ var next = progressBarWidth(percent,fullWidth); clearInterval(timer); //$element.delay(3000).hide(); //percent = 0; } //else if($element.find('#bar').is(":visible") & $element.find('#bar').width() < 400){ else { var next = progressBarWidth(percent,fullWidth); } $element.find('#bar').animate({ width:next }, 30000); }, 3000); }; function checksmiles () { if (document.form.identifier.value == "") { alert("Please draw or insert a chemical structure."); //$("img.circle").hide(); document.form.identifier.focus(); $('#progressBar').hide(); return false; }; return true; }; function checkboxes () { var checked = false; $('input[type="checkbox"]').each(function() { if ($(this).is(":checked")) { checked = true; }; }); if (checked == false){ alert("Please select an endpoint."); //$("img.circle").hide(); $('#progressBar').hide(); return false; }; return true; }; function jsmeOnLoad() { jsmeApplet = new JSApplet.JSME("appletContainer", "380px", "340px", { //optional parameters "options" : "polarnitro" }); document.JME = jsmeApplet; }; function getsmiles() { if (document.JME.smiles() != '') { document.form.identifier.value = document.JME.smiles() ; }; }; function showcircle(){ $("img.circle").show(); }; // init task for progress - task_uri = OpenTox::Task.task_uri - OpenTox::Task.run("Predict compound.", "#{$lazar[:uri]}", task_uri)do;end // whole site content needs to be in one form. Input and checkboxes are proofed by js functions. %form{:name => "form", :action => to('/predict'), :method => "post", :enctype => "multipart/form-data", :onsubmit => "return !!(checksmiles() & checkboxes())" } %fieldset#top %a{:href => "#", :id => "linkInsert"} %h1 1. Draw a chemical structure :javascript $("a#linkInsert").click(function () { $("#insert").toggle(); document.location = document.location + "#" + "insert"; }); #insert %p %label   #appletContainer %br %label{:for => 'identifier'} or enter the %a{:href => "http://en.wikipedia.org/wiki/Simplified_molecular_input_line_entry_specification", :rel => "external"} SMILES string: %input{:type => 'text', :name => 'identifier', :id => 'identifier', :size => '60'} .arrow %img{:src=>"/images/arrow_down_float.png", :alt=>"v", :class=> "arrow"} %fieldset#middle %a{:href => "#models", :id => "linkModels"} %h1 2. Select one or more endpoints :javascript $("a#linkModels").click(function () { $("#models").toggle(); document.location = document.location + "#" + "models"; }); #models - @detail_count = 0 - @endpoints.each do |endpoint| %b= endpoint[0].split("#").last.gsub("_", " ").gsub(/\"|\]/, "")+" :" - @models.each do |model| - if endpoint == model.type.select{|e| e =~ /Endpoint/} - model_title = model.title.split("_").last(2)[0] - model_t = model.title.gsub("_", " ") - @detail_count +=1 %div{:id => model_title} %input{:type => "checkbox", :name => "selection[#{model.uri}]", :id => "selection[#{model_title}]", :value => true, :disabled => false} %label{:for => "selection[#{model_title}]"} = model_t %a{:href=>"#details", :id => "linkDetails#{model_title}", :title=>"#{model_title} details", :style=>"font-size:small;"} [Details] :javascript $("a#linkDetails#{model_title}").click(function () { $("#details_#{@detail_count}").toggle(); //document.location = document.location + "#" + "details"; }); #details{:id => "#{@detail_count}", :style => "display:none;background-color:white;padding:1em;"} %h3 Model Details: %p{:style=>"display:inline;"} Algorithm: %code{:style=>"font-size:x-large;"} lazar - model.type.to_s =~ /regression/i ? type = "regression" : type = "classification" - @model_type = type %p= "Type: "+type - training_dataset = OpenTox::Dataset.new "#{model[RDF::OT.trainingDataset]}" - training_compounds = training_dataset.compounds.size.to_s %p= "Training compounds: "+training_compounds %p{:style=>"display:inline;"} Descriptors: - if type == "regression" %a{:href=>"https://services.in-silico.ch/algorithm/descriptor/physchem/list", :title=>"link opens in new window.", :target=>"_blank"} Physico-chemical (PC) properties - else %a{:href=>"http://www.maunz.de/libfminer2-bbrc-doc/", :title=>"link opens in new window.", :target=>"_blank"} Fminer backbone refinement classes %br %br %p{:style=>"display:inline"}= "Model: " %a{:href=>"#{to("/predict/#{CGI.escape(model.uri)}")}", :title=>"download"} rdf %br %br %p{:style=>"display:inline"}= "Feature Dataset: " %a{:href=>"#{to("/predict/#{CGI.escape(model[RDF::OT.featureDataset])}")}", :title=>"download"} rdf -#%a{:href=>"#{to("/predict/#{CGI.escape(model[RDF::OT.featureDataset])}")}/sdf", :title=>"download"} sdf %br %br %p{:style=>"display:inline"}= "Training Dataset: " %a{:href=>"#{to("/predict/#{CGI.escape(model[RDF::OT.trainingDataset])}")}", :title=>"link opens in new window."} rdf -#%a{:href=>"#{to("/predict/#{CGI.escape(model[RDF::OT.trainingDataset])}/sdf")}", :title=>"link opens in new window."} sdf %br - unless model.metadata[RDF::OT.crossValidation].nil? %h3 Validation: %a{:href => "#{model.metadata[RDF::OT.crossValidation][0]}", :title=>"link opens in new window.", :target=>"_blank"} Detailed report link %br - @cv = OpenTox::Validation.find "#{model.metadata[RDF::OT.crossValidation][0]+"/statistics"}" = haml :validation, :layout => false, :validation => @cv, :model_type => @model_type .arrow %img{:src=>"/images/arrow_down_float.png", :alt=>"v", :class=> "arrow"} %fieldset#bottom %table{:style=>"cellspacing:10;cellpadding:20"} %tr %td{:style=>"width:10em;align:center;valign:middle;"} %h1 3. Predict %td{:style=>"width:10%;align:center;valign:middle;"} %input{ :type => "submit", :id => "submit", :value=>">>", :onclick => "(progress($('#progressBar'),'#{task_uri}') & getsmiles() & checkboxes())", :style=>"cursor: pointer;display:inline;width:50px;height:50px;border-radius: 50%;color:#2b2b2b;text-align:center;text-decoration:none;background:#f76700;box-shadow: 0 0 5px white;font-weight:bold;"} %input{:type => "hidden", :name => "task_uri", :value => "#{task_uri}"} %td{:style=>"align:center;valign:middle;"} -#%img{:src=>"/images/wait30trans.gif", :class=>"circle", :style=>"display:none;background-color:white;margin-left:10%;border:solid 1px;vertical-align:middle;"} #progressBar{:style=>"width:400px;height:22px;border:1px solid #2b2b2b;background-color:gray;display:none;"} #bar{:style =>"width:0;height:100%;color:#fff;text-align:right;line-height:22px;background-color:#0099ff;"}