:javascript $(document).ready(function(){ $('[data-toggle="popover"]').popover(); $(".modal").on('hidden.bs.modal', function() { $(this).removeData('bs.modal'); }); }); %div.well %a.btn.btn-primary{:href => to('/predict')} New Prediction / displays all prediction result in first table %div.table-responsive %table.table.table-bordered{:id=>"overview"} %thead %tr %h2 Prediction Results: %tbody %tr %td{:id=>"compound", :style=>"vertical-align:top;"} %a.btn.btn-link{:href => to("/prediction/#{CGI.escape(@compound.uri)}/details"), :id=>"linkCompound", data: { toggle: "modal", target:"#detailsTop"}} %img{:src=>"#{@compound.uri}/image", :alt=>"no image", :title=>"#{@compound.smiles}", :width=>"150", :height=>"150"} - count=0 - @predictions.each do |pa| / unpack to single array/prediction / if p.data_entries array[0].size == 3 -> database hit / change 'result' if database hit / change 'confidence' if database hit - pa.each do |p| / prevent conversion of nil /- $logger.debug "data entries in prediction array:\t#{p.data_entries}\n" - database_hit = 0 - if p.data_entries[0].size == 3 - database_hit = 1 - c = p.data_entries[0][0] != nil ? p.data_entries[0][0] : '' - case c - when /(false|true|inactive|active)/i - c = c - else /- c = Array.new - c = (p.data_entries[0][0].class == Float) ? p.data_entries[0][0].round(3) : (p.data_entries[0][0] != nil ? p.data_entries[0][0] : "no prediction") %td{:style=>"vertical-align:top;"} %b{:class => "title"} = @prediction_models[count].title.gsub("_", " ") - @model_uri = @prediction_models[count].uri %p / model type (classification|regression) %b Type: = @model_type[count] %p - unless database_hit > 0 %b Result: %b - if c.class == String - result = (c != '' ? c : "No prediction result.") = result - else - result = (c != '' ? c.round(3) : "No prediction result.") = result - confidence = (p.data_entries[0][1] != nil && p.data_entries[0][1] != 0.0) ? p.data_entries[0][1].round(2) : "--" %a.btn.glyphicon.glyphicon-info-sign{:href=>"#", :title=>"Result", data: {toggle:"popover", placement:"left", trigger:"focus", html:"true", content:"LAZAR calculates searches the training dataset for similar compounds (neighbors) and calculates the prediction from their measured activities. LAZAR calculates predictions using Please keep in mind that predictions are based on the measured activities of neighbors."}} - @cv = OpenTox::Validation.find @prediction_models[count].metadata[RDF::OT.crossValidation][0]+"/statistics" #unless @prediction_models[count].title.include?("Mutagenicity") - unless @model_type[count] == "regression" %br %b = "Probability: " - unless result == "No prediction result." or confidence == "--" - prob = @cv.probabilities( confidence, result )[:probs][result]*100 = "#{prob.round(1)} %" %p %b Confidence: = confidence %a.btn.glyphicon.glyphicon-info-sign{:href=>"#", :title=>"Confidence", data: {toggle:"popover", placement:"left", trigger:"focus", html:"true", content:"Indicates the applicability domain of a model. Predictions with a high confidence can be expected to be more reliable than predictions with low confidence. Confidence values may take any value between 0 and 1. For most models confidence > 0.025 is a sensible (hard) cutoff to distinguish between reliable and unreliable predictions."}} %p /TODO add tooltip for significant ftagments and descriptors - if @model_type[count] =~ /classification/i && (p.data_entries[0][1] != nil && p.data_entries[0][1] != 0.0) / Significant fragments: %a.btn.btn-primary.btn-sm{:id=>"linkSigFragments", :href => to("/prediction/#{CGI.escape(@model_uri)}/#{@model_type[count]}/#{CGI.escape(@compound.uri)}/fingerprints"), data: { toggle: "modal", target:"#detailsTop"}} Significant fragments - if @model_type[count] =~ /regression/i && (p.data_entries[0][1] != nil && p.data_entries[0][1] != 0.0) / Descriptors %a.btn.btn-primary.btn-sm{:id=>"linkDescriptors", :href => to("/prediction/#{CGI.escape(@model_uri)}/#{@model_type[count]}/#{CGI.escape(@compound.uri)}/fingerprints"), data: { toggle: "modal", target:"#detailsTop"}} Descriptors %p - if c != '' %a.btn.btn-warning.btn-sm{:href=> "#tabs", :id=>"link#{count}"} Neighbors :javascript $("a#link#{count}").click(function () { $(".results").show(); document.getElementById('tabs').focus(); $("#tabs").tabs({ active: "#{count}" }); }); %p - count+=1 - else # database hit %b Database hit: %br Compound found in training dataset %p %b Measured activity: = p.data_entries[0][2] %p - count+=1 / always show the neighbors table, message is given there = haml :neighbors, :layout => false, :model_type => @model_type %div.modal.fade{:id=>"detailsTop", :role=>"dialog"} %div.modal-dialog.modal-lg %div.modal-content