blob: ac5e36005ba863f671f7abf16ab5b441a6fae466 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
|
require 'rubygems'
require 'compass' #must be loaded before sinatra
require 'sinatra'
require 'haml' #must be loaded after sinatra
require 'opentox-client'
require 'opentox-server'
require File.join(File.dirname(__FILE__),'helper.rb')
require File.join(ENV["HOME"],".opentox","config","lazar-gui.rb")
get '/?' do
redirect to('/predict')
end
get '/predict/?' do
@models = OpenTox::Model.all $model[:uri]
haml :predict
end
post '/predict/?' do
# transfered input
@identifier = params[:identifier]
# get compound from SMILES
@compound = OpenTox::Compound.from_smiles $compound[:uri], @identifier.to_s
# init
@@prediction_models = []
@@predictions = []
# init lazar algorithm
lazar = OpenTox::Algorithm.new File.join($algorithm[:uri],"lazar")
# gather models from service and compare if selected
params[:selection].each do |model|
@mselected = model[0]
@mall = OpenTox::Model.all $model[:uri]
@mall.each do |m|
m.get
@@prediction_models << m if m.title =~ /#{@mselected}/
end
#$logger.debug "@prediction_models: #{@@prediction_models.inspect}"
end
# predict with selected models
# results in prediction variable
# store prediction in array for better handling
#$logger.debug "@models: #{@models.inspect}"
@@prediction_models.each do |m|
@prediction_uri = m.run :compound_uri => "#{@compound.uri}"
prediction = OpenTox::Dataset.new @prediction_uri
pa = []
pa << prediction
@@predictions << pa
#$logger.debug "prediction class: #{prediction.class}"
end
haml :prediction
end
get '/prediction/neighbours/:id?' do
haml :neighbours, :layout => false
end
get '/prediction/:neighbour/details/?' do
@compound = OpenTox::Compound.new params[:neighbour]
haml :details, :layout => false
end
get '/stylesheets/:name.css' do
content_type 'text/css', :charset => 'utf-8'
sass(:"stylesheets/#{params[:name]}", Compass.sass_engine_options )
end
|
