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require 'minitest/autorun'
require 'capybara'
require 'capybara-webkit'
ENV['DISPLAY'] ="localhost:1.0"
Capybara.register_driver :webkit do |app|
Capybara::Webkit::Driver.new(app).tap{|d| d.browser.ignore_ssl_errors}
end
Capybara.default_driver = :webkit
Capybara.default_max_wait_time = 20
Capybara.javascript_driver = :webkit
Capybara.run_server = false
Capybara.app_host = "http://localhost:8088"
begin
puts "Service URI is: http://localhost:8088"
rescue
puts "Unable to start service."
exit
end
class LazarWebTest < MiniTest::Test
def self.test_order
:sorted
end
include Capybara::DSL
def test_00_xsetup
`Xvfb :1 -screen 0 1024x768x16 2>/dev/null &`
sleep 2
end
def test_01_visit
visit('/predict')
assert page.has_content?('Lazar Toxicity Predictions')
assert page.has_content?("Draw a chemical structure")
assert page.has_content?("enter")
assert page.has_content?("upload")
assert page.has_content?("Select one or more endpoints")
assert page.has_content?("Acute toxicity")
assert page.has_content?("Fathead minnow")
assert page.has_content?("Carcinogenicity")
assert page.has_content?("Rat")
assert page.has_content?("Rodents (multiple species/sites)")
assert page.has_content?("Mouse")
assert page.has_content?("Maximum Recommended Daily Dose")
assert page.has_content?("Human")
assert page.has_content?("Predict")
end
def test_02_insert_wrong_smiles
visit('/')
page.fill_in 'identifier', :with => "blahblah"
check('selection[Rat]')
first(:button, '>>').click
assert page.has_content?('Attention')
end
def test_03_check_all_links_exists
visit('/')
links = ["Details | Validation", "SMILES", "toxicology gmbh 2004 - #{Time.now.year.to_s}"]
links.each{|l| assert page.has_link?(l), "true"}
end
def test_04_model_details
visit("/")
details = page.all('a', :text => 'Details | Validation')
details[0].click
assert page.has_content?('Model:')
assert page.has_content?('Source: http://www.epa.gov/comptox/dsstox/sdf_epafhm.html')
assert page.has_content?('Algorithm: LAZAR')
assert page.has_content?('Type: regression')
assert page.has_content?('Training dataset: EPAFHM.csv')
assert page.has_content?('Training compounds: 617')
assert page.has_content?('Validation:')
assert page.has_content?('Num folds: 10')
details[0].click
#
details[1].click
assert page.has_content?('Model:')
assert page.has_content?('Source: http://www.epa.gov/ncct/dsstox/sdf_cpdbas.html')
assert page.has_content?('Algorithm: LAZAR')
assert page.has_content?('Type: classification')
assert page.has_content?('Training dataset: DSSTox_Carcinogenic_Potency_DBS_Rat.csv')
assert page.has_content?('Training compounds: 1195')
assert page.has_content?('Validation:')
assert page.has_content?('Num folds: 10')
details[1].click
#
details[2].click
assert page.has_content?('Model:')
assert page.has_content?('Source: http://www.epa.gov/ncct/dsstox/sdf_cpdbas.html')
assert page.has_content?('Algorithm: LAZAR')
assert page.has_content?('Type: classification')
assert page.has_content?('Training dataset: DSSTox_Carcinogenic_Potency_DBS_MultiCellCall.csv')
assert page.has_content?('Training compounds: 1116')
assert page.has_content?('Validation:')
assert page.has_content?('Num folds: 10')
details[2].click
#
details[3].click
assert page.has_content?('Model:')
assert page.has_content?('Source: http://www.epa.gov/ncct/dsstox/sdf_cpdbas.html')
assert page.has_content?('Algorithm: LAZAR')
assert page.has_content?('Type: classification')
assert page.has_content?('Training dataset: DSSTox_Carcinogenic_Potency_DBS_Mouse.csv')
assert page.has_content?('Training compounds: 973')
assert page.has_content?('Validation:')
assert page.has_content?('Num folds: 10')
details[3].click
#
details[4].click
assert page.has_content?('Model:')
assert page.has_content?('Source: http://www.epa.gov/comptox/dsstox/sdf_fdamdd.html')
assert page.has_content?('Algorithm: LAZAR')
assert page.has_content?('Type: regression')
assert page.has_content?('Training dataset: FDA_v3b_Maximum_Recommended_Daily_Dose_mmol.csv')
assert page.has_content?('Training compounds: 1216')
assert page.has_content?('Validation:')
assert page.has_content?('Num folds: 10')
details[4].click
end
def test_05_predict
visit('/')
page.fill_in('identifier', :with => "NNc1ccccc1")
check('selection[Rat]')
first(:button, '>>').click
assert page.has_content?('Carcinogenicity (Rat)'), "true"
assert page.has_content?('Type: Classification'), "true"
assert page.has_content?('Prediction: active'), "true"
assert page.has_content?('Confidence: 0.019'), "true"
assert page.has_content?('Neighbors'), "true"
assert page.has_content?('Compound'), "true"
assert page.has_content?('Measured Activity'), "true"
assert page.has_content?('Similarity'), "true"
=begin
assert page.has_link?('Significant fragments'), "true"
assert page.has_link?('v'), "true"
open 'significant fragments' view
find_link('linkPredictionSf').click
sleep 5
within_frame('details_overview') do
assert page.has_content?('Predominantly in compounds with activity "inactive"'), "true"
assert page.has_content?('Predominantly in compounds with activity "active"'), "true"
assert page.has_content?('p value'), "true"
# inactive
assert page.has_content?('[#6&a]:[#6&a]:[#6&a]:[#6&a]:[#6&a]-[#7&A]'), "true"
assert page.has_content?('0.98674'), "true"
assert page.has_content?('[#6&a]:[#6&a](-[#7&A])(:[#6&a]:[#6&a]:[#6&a])'), "true"
assert page.has_content?('0.97699'), "true"
assert page.has_content?('[#6&a]:[#6&a](-[#7&A])(:[#6&a]:[#6&a])'), "true"
assert page.has_content?('0.97699'), "true"
assert page.has_content?('[#6&a]:[#6&a](-[#7&A])(:[#6&a])'), "true"
assert page.has_content?('0.97699'), "true"
assert page.has_content?('[#6&a]:[#6&a]'), "true"
assert page.has_content?('0.99605'), "true"
assert page.has_content?('[#6&a]:[#6&a]:[#6&a]:[#6&a]'), "true"
assert page.has_content?('0.99791'), "true"
assert page.has_content?('[#6&a]:[#6&a]:[#6&a]:[#6&a]:[#6&a]'), "true"
assert page.has_content?('0.99985'), "true"
# active
assert page.has_content?('[#7&A]-[#7&A]'), "true"
assert page.has_content?('0.99993'), "true"
# close 'significant fragments' view
find_button('closebutton').click
end
find_link('link0').click
sleep 2
assert page.has_content?('Supporting information'), "true"
first(:link, 'linkCompound').click
sleep 5
within_frame('details_overview') do
assert page.has_content?('SMILES:'), "true"
assert page.has_content?('c1ccc(cc1)NN'), "true"
assert page.has_content?('InChI:'), "true"
assert page.has_content?('1S/C6H8N2/c7-8-6-4-2-1-3-5-6/h1-5,8H,7H2'), "true"
assert page.has_content?('Names:'), "true"
assert page.has_content?('Phenylhydrazine'), "true"
assert page.has_link?('PubChem read across'), "true"
end
=end
end
def test_99_kill
`pidof Xvfb|xargs kill`
end
end
|
