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authorrautenberg <rautenberg@in-silico.ch>2017-01-26 12:59:44 +0100
committerrautenberg <rautenberg@in-silico.ch>2017-01-26 12:59:44 +0100
commitbb7d9009a9be8a8f2244944885ed9fec5086e26c (patch)
tree16dd1054f36a853697351db4426f24c79f22c603
parentbc25b877900750e7c5a355791604a892c2ef0467 (diff)
split integation Text to blocks
-rw-r--r--markdown_blocks/integration_lazar-rest.md2
-rw-r--r--markdown_blocks/integration_lazar.md3
-rw-r--r--markdown_blocks/integration_nano-lazar.md3
-rw-r--r--markdown_blocks/integration_ontoviewer.md2
-rw-r--r--markdown_blocks/integration_rdf.md2
-rw-r--r--markdown_blocks/integration_sparql.md2
-rw-r--r--nmsa-ist-integration.tex42
-rw-r--r--nmsa-ist-rest.tex6
-rw-r--r--nmsa-ist-services.tex12
9 files changed, 53 insertions, 21 deletions
diff --git a/markdown_blocks/integration_lazar-rest.md b/markdown_blocks/integration_lazar-rest.md
new file mode 100644
index 0000000..80c430b
--- /dev/null
+++ b/markdown_blocks/integration_lazar-rest.md
@@ -0,0 +1,2 @@
+ - Interacts with the `lazar` library (e.g. for toxicity predictions, model creation and validation, descriptor calculation)
+ - Will be maintained and developed in the FP7 OpenRiskNet project \ No newline at end of file
diff --git a/markdown_blocks/integration_lazar.md b/markdown_blocks/integration_lazar.md
new file mode 100644
index 0000000..49453ad
--- /dev/null
+++ b/markdown_blocks/integration_lazar.md
@@ -0,0 +1,3 @@
+ - Mirrors eNanoMapper data for read-across models
+ - Creates read-across predictions for the `nano-lazar` webinterface
+ - Responds to requests from the `lazar-rest` interface (e.g. nanoparticle predictions, model creation and validation, descriptor calculation) \ No newline at end of file
diff --git a/markdown_blocks/integration_nano-lazar.md b/markdown_blocks/integration_nano-lazar.md
new file mode 100644
index 0000000..341272b
--- /dev/null
+++ b/markdown_blocks/integration_nano-lazar.md
@@ -0,0 +1,3 @@
+ - Obtains nanoparticle toxicity predictions from the `lazar` library
+ - Uses ontologies (eNanoMapper, BioPortal, UniProt) to explain domain specific terms in the user interface
+ - Uses ontologies and eNanoMapper data as supporting information for read-across predictions \ No newline at end of file
diff --git a/markdown_blocks/integration_ontoviewer.md b/markdown_blocks/integration_ontoviewer.md
new file mode 100644
index 0000000..7ab7f99
--- /dev/null
+++ b/markdown_blocks/integration_ontoviewer.md
@@ -0,0 +1,2 @@
+ - Sends SPARQL queries to the RDF store
+ - Visualises RDF response from the RDF store \ No newline at end of file
diff --git a/markdown_blocks/integration_rdf.md b/markdown_blocks/integration_rdf.md
new file mode 100644
index 0000000..dec5b8d
--- /dev/null
+++ b/markdown_blocks/integration_rdf.md
@@ -0,0 +1,2 @@
+ - Mirrors eNanoMapper data and ontologies
+ - Responds to SPARQL queries from the ontology viewer and the SPARQL interface
diff --git a/markdown_blocks/integration_sparql.md b/markdown_blocks/integration_sparql.md
new file mode 100644
index 0000000..158c0cd
--- /dev/null
+++ b/markdown_blocks/integration_sparql.md
@@ -0,0 +1,2 @@
+ - Sends SPARQL queries to the RDF store
+ - Receives SPARQL query results in different formats \ No newline at end of file
diff --git a/nmsa-ist-integration.tex b/nmsa-ist-integration.tex
index 2f473ff..2c35387 100644
--- a/nmsa-ist-integration.tex
+++ b/nmsa-ist-integration.tex
@@ -1,6 +1,6 @@
\documentclass[final]{beamer}
\usetheme{IST}
-\usepackage[orientation=portrait,size=a0,scale=1.3,debug]{beamerposter} % poster size
+\usepackage[orientation=portrait,size=a0,scale=1.24,debug]{beamerposter} % poster size
\usepackage[absolute,overlay]{textpos}
\usepackage[utf8]{inputenc}
@@ -21,38 +21,56 @@
\input{./markdown_blocks/integration_summary}
\end{block}
- \begin{exampleblock}{Links}
- \input{./markdown_blocks/integration_links}
- \end{exampleblock}
-
+ \begin{block}{{\tt lazar} \cite{helma_2017}\cite{helma_christoph_2016_215483}}
+ \input{./markdown_blocks/integration_lazar}
+ \end{block}
- \begin{block}{References}
- \small\bibliography{references}
+ \begin{block}{{\tt nano-lazar} GUI \cite{gebele_denis_2017_250818}}
+ \input{./markdown_blocks/integration_nano-lazar}
\end{block}
\end{textblock}
\begin{textblock}{40.5}(42.6,10)
- \begin{block}{Integration details}
- \input{./markdown_blocks/integration_text}
+ \begin{block}{{\tt nano-lazar} REST interface \cite{rautenberg_micha_2016_187328}}
+ \input{./markdown_blocks/integration_lazar-rest}
+ \end{block}
+
+ \begin{block}{eNM {\tt ontology viewer} \cite{gebele_denis_2017_259384}}
+ \input{./markdown_blocks/integration_ontoviewer}
+ \end{block}
+
+ \begin{block}{RDF store}
+ \input{./markdown_blocks/integration_rdf}
+ \end{block}
+
+ \begin{block}{eNM SPARQL interface}
+ \input{./markdown_blocks/integration_sparql}
\end{block}
+
\end{textblock}
- \begin{textblock}{82.1}(1,50)
+ \begin{textblock}{82.1}(1,36)
\input{./markdown_blocks/integration_diagram}
\end{textblock}
- \begin{textblock}{40.5}(1,82)
+ \begin{textblock}{40.5}(1,97)
+ \begin{exampleblock}{Links}
+ \input{./markdown_blocks/integration_links}
+ \end{exampleblock}
\end{textblock}
- \begin{textblock}{40.5}(42.6,82)
+ \begin{textblock}{40.5}(42.6,97)
+ \begin{block}{References}
+ \small\bibliography{references}
+ \end{block}
\end{textblock}
diff --git a/nmsa-ist-rest.tex b/nmsa-ist-rest.tex
index 4f840f1..b8fc2df 100644
--- a/nmsa-ist-rest.tex
+++ b/nmsa-ist-rest.tex
@@ -22,7 +22,7 @@
\input{./markdown_blocks/rest_summary}
\end{block}
- \begin{block}{\tt{lazar}}
+ \begin{block}{{\tt lazar}}
\justifying
\input{./markdown_blocks/rest_lazar_description}
\end{block}
@@ -32,12 +32,12 @@
\input{./markdown_blocks/rest_rest}
\end{block}
- \begin{block}{\tt{lazar-rest} services}
+ \begin{block}{{\tt lazar-rest} services}
\justifying
\input{./markdown_blocks/rest_lazar-rest}
\end{block}
- \begin{block}{\tt{lazar-rest} Swagger interface}
+ \begin{block}{{\tt lazar-rest} Swagger interface}
\vskip.2ex
\input{./markdown_blocks/rest_swagger_ui}
\vskip.2ex
diff --git a/nmsa-ist-services.tex b/nmsa-ist-services.tex
index 9ab14ef..9d42ba8 100644
--- a/nmsa-ist-services.tex
+++ b/nmsa-ist-services.tex
@@ -21,19 +21,19 @@
\input{./markdown_blocks/services_summary}
\end{block}
- \begin{block}{\tt{lazar}}
+ \begin{block}{{\tt lazar}}
\input{./markdown_blocks/services_lazar}
\end{block}
- \begin{block}{\tt{nano-lazar}}
+ \begin{block}{{\tt nano-lazar}}
\input{./markdown_blocks/services_nano-lazar}
\end{block}
- \begin{block}{\tt{nano-lazar}-paper}
+ \begin{block}{{\tt nano-lazar-paper}}
\input{./markdown_blocks/services_nano-lazar-paper}
\end{block}
- \begin{block}{\tt{lazar-rest}}
+ \begin{block}{{\tt lazar-rest}}
\input{./markdown_blocks/services_lazar-rest}
\end{block}
@@ -45,11 +45,11 @@
\begin{textblock}{40.5}(42.6,8.6)
- \begin{block}{eNM ontoviewer}
+ \begin{block}{eNM {\tt ontology viewer}}
\input{./markdown_blocks/services_ontoviewer}
\end{block}
- \begin{block}{\tt{qsar-report}}
+ \begin{block}{{\tt qsar-report}}
\input{./markdown_blocks/services_qsar-report}
\end{block}