updated onto-viewer

3 files changed, 22 insertions, 12 deletions

diff --git a/markdown_blocks/ontoviewer_links.md b/markdown_blocks/ontoviewer_links.md
new file mode 100644
index 0000000..ca9edd3
--- /dev/null
+++ b/markdown_blocks/ontoviewer_links.md
@@ -0,0 +1,10 @@
+* eNM Ontology Viewer <https://query.enanomapper.net/enm-viewer>
+
+* eNM SPARQL interface <https://sparql.enanomapper.net>
+
+* Source code <https://github.com/enanomapper/enm-ontoviewer>
+
+* eNM Ontologies <https://github.com/enanomapper/ontologies>
+
+* eNM Database service <https://data.enanomapper.net>
+
diff --git a/markdown_blocks/ontoviewer_summary.md b/markdown_blocks/ontoviewer_summary.md
index e143897..9dda6f0 100644
--- a/markdown_blocks/ontoviewer_summary.md
+++ b/markdown_blocks/ontoviewer_summary.md
@@ -1,6 +1,6 @@
-Within the eNanoMapper project in silico toxicology (IST) maintains the RDF
+Within the eNanoMapper project in silico toxicology (IST) maintains the Resource Description Framework (RDF)
 database with nanoparticle ontologies and data. In order to simplify the
 combined search for data and ontologies in the eNanoMapper RDF backend, we have
 developed an interface for the visualisation of SPARQL queries. This poster
-present the enm-ontoviewer application considering two use case scenarios and
+presents the enm-ontoviewer application \cite{gebele_denis_2017_259384} considering two use case scenarios and
 links to source code and documentation.
diff --git a/nmsa-ist-ontoviewer.tex b/nmsa-ist-ontoviewer.tex
index a393a82..ad6f4e3 100644
--- a/nmsa-ist-ontoviewer.tex
+++ b/nmsa-ist-ontoviewer.tex
@@ -10,7 +10,7 @@
 \setlength{\TPHorizModule}{1cm}
 \setlength{\TPVertModule}{1cm}
 
-\title{eNM-Ontoviewer: interactive visualisation of SPARQL queries for eNanoMapper ontologies and data}
+\title{eNM-Ontoviewer: Interactive visualisation of SPARQL queries for eNanoMapper ontologies and data}
 \author{D. Gebele, M. Rautenberg, C. Helma}
 \institute{\emph{in silico} toxicology gmbh, Basel, Switzerland}
 \footer{Contact: \texttt{support@in-silico.ch}. Information: \texttt{www.in-silico.ch}}
@@ -33,8 +33,8 @@
     
     \begin{textblock}{62}(20,18)
       \justifying
-      \begin{block}{Use case 1: Investigate the eNanoMapper Ontology}
-        Assuming that we are interested in \emph{toxicological endpoints} we execute the template SPARQL query to receive results either as a static graphic named \emph{Dendogram} (Figure 1) or as a interactive graphic named \emph{Sunburst} (Figure 2). To get all depending information to our subject we can now use the SPARQL interface (Figure 4) and write another query. We are always able to refine our query from step 2 or investigate direct any kind of URIs from the result (Figure 5).
+      \begin{block}{Use case 1: Investigate the eNanoMapper ontology}
+        Assuming that we are interested in \emph{toxicological endpoints} we execute the template SPARQL query to receive results either as a static \emph{Dendogram} graph \emph{(Figure 1)} or as an interactive \emph{Sunburst} graph \emph{(Figure 2)}. To get all information about a subject we can use the SPARQL interface \emph{(Figure 4)} and write another query. We are always able to refine our query or investigate directly any kind of URIs from the result \emph{(Figure 5)}.
         \begin{figure}
           \hspace{-0.15\textwidth}
           \begin{subfigure}[c]{0.3\textwidth}
@@ -44,7 +44,7 @@
           \hspace{0.25\textwidth}
           \begin{subfigure}[c]{0.2\textwidth}
             \includegraphics[width=\textwidth,keepaspectratio]{onto-use-case-1b.png}
-            \caption{Figure 3: Sunburst. Interactive zoom on 'dermal toxicity' endpoint.}
+            \caption{Figure 3: Sunburst. Interactive zoom on \emph{dermal toxicity} endpoint.}
           \end{subfigure}
         \end{figure}
         \vspace{0.05\textwidth}
@@ -53,12 +53,12 @@
           \hspace{-0.1\textwidth}
           \begin{subfigure}[c]{0.3\textwidth}
             \includegraphics[width=\textwidth,keepaspectratio]{onto-use-case-1c.png}
-            \caption{Figure 4: SPARQL interface. Take \emph{skin sensitization} subclass endpoint from Figure 3 for a detail query.}
+            \caption{Figure 4: SPARQL interface. Select \emph{skin sensitization} subclass endpoint from \emph{Figure 3} for a detail query.}
           \end{subfigure}
           \hspace{0.2\textwidth}
           \begin{subfigure}[c]{0.3\textwidth}
             \includegraphics[width=\textwidth,keepaspectratio]{onto-use-case-1d.png}
-            \caption{Figure 5: Following a link from query result in \emph{Figure 4} we get pointed to the eNanoMapper ontology on BioPortal.}
+            \caption{Figure 5: Following a link from the query result in \emph{Figure 4} we reach the eNanoMapper ontology on BioPortal.}
           \end{subfigure}
         \end{figure}
       \end{block}
@@ -67,20 +67,20 @@
         
     \begin{textblock}{62}(20,70)
       \justifying
-      \begin{block}{Use case 2: Investigate the eNanoMapper Data}
-        Assuming that we want to investigate eNanoMapper nano material data we can simply choose one of the given SPARQL examples (Figure 1) as a starting point. In this case we are interessted in \emph{surface charge} and search for the zeta potential and its values. We receive a table with values and resource identifiers which point us direct to the resource page within eNanoMapper data service (Figure 7).
+      \begin{block}{Use case 2: Investigate eNanoMapper data}
+        Assuming that we want to investigate eNanoMapper nano material data we can simply choose one of the given SPARQL examples \emph{(Figure 6)} as a starting point. In this case we are interested in \emph{surface charge} and search for the zeta potential and its values. We receive a table with values and resource identifiers which point us directly to the resource page of the eNanoMapper database service \emph{(Figure 7)}.
         \begin{figure}
           %\centering
           \vspace{0.05\textwidth}
           \hspace{-0.1\textwidth}
           \begin{subfigure}[c]{0.3\textwidth}
             \includegraphics[width=\textwidth,keepaspectratio]{onto-use-case-2a.png}
-            \caption{Figure 6: SPARQL interface. Choosen one of the "Physio-Chemical Characteristics" examples.}
+            \caption{Figure 6: SPARQL interface. Select one of the \emph{physio-chemical characteristics} examples.}
           \end{subfigure}
           \hspace{0.2\textwidth}
           \begin{subfigure}[c]{0.4\textwidth}
             \includegraphics[width=\textwidth,keepaspectratio]{onto-use-case-2b.png}
-            \caption{Figure 7: Follow link from query result in Figure 6 points to eNanoMapper data store.}
+            \caption{Figure 7: Following a link from the query result in \emph{Figure 6} we reach the eNanoMapper database service.}
           \end{subfigure}
         \end{figure}
       \end{block}