1 files changed, 69 insertions, 37 deletions
diff --git a/nmsa-ist-ontoviewer.tex b/nmsa-ist-ontoviewer.tex
index 41a36df..72040f9 100644
--- a/nmsa-ist-ontoviewer.tex
+++ b/nmsa-ist-ontoviewer.tex
@@ -3,11 +3,14 @@
 \usepackage[orientation=portrait,size=a0,scale=1.4,debug]{beamerposter}  % poster size
 \usepackage[absolute,overlay]{textpos}
 \usepackage[utf8]{inputenc}
+\usepackage{graphicx,caption,subcaption,float,lipsum}
+\captionsetup[subfigure]{labelformat=empty}
+\graphicspath{ {./images/} }
 
 \setlength{\TPHorizModule}{1cm}
 \setlength{\TPVertModule}{1cm}
 
-\title{eNM-Ontoviewer: interactive visualisation of SPARQL queries for eNanoMapper ontologies and data}
+\title{eNM-Ontoviewer: Interactive visualisation of SPARQL queries for eNanoMapper ontologies and data}
 \author{D. Gebele, M. Rautenberg, C. Helma}
 \institute{\emph{in silico} toxicology gmbh, Basel, Switzerland}
 \footer{Contact: \texttt{support@in-silico.ch}. Information: \texttt{www.in-silico.ch}}
@@ -16,53 +19,82 @@
 
   \begin{frame}{}
 
-    \begin{textblock}{80}(1,12)
-    % \begin{block}{}
-        \input{./markdown_blocks/company}
-    % \end{block}
+    \begin{textblock}{81.5}(1,12)
+      \justifying
+      \input{./markdown_blocks/ontoviewer_summary}
     \end{textblock}
-
-    \begin{textblock}{40.5}(1,16)
-      \begin{block}{Abstract}
-        \input{./markdown_blocks/ontoviewer_summary}
-      \end{block}
-
-      \begin{block}{Screenshot}
-        \input{./markdown_blocks/screenshot}
-      \end{block}
-
-      \begin{block}{Markdown tables}
-        \input{./markdown_blocks/table}
-      \end{block}
-
+    
+    \begin{textblock}{30}(1,20)
+      \includegraphics[scale=0.35,trim={20cm 0 0 0},clip]{onto-viewer-dendogram-1.png}
     \end{textblock}
-
-    \begin{textblock}{40.5}(42.6,16)
-
-      \begin{block}{Maths example}
-        \input{./markdown_blocks/maths}
+    \begin{textblock}{40}(3,96)
+      \small Figure 1: Dendogram
+    \end{textblock}
+    
+    \begin{textblock}{62}(20,18)
+      \justifying
+      \begin{block}{Use case 1: Investigate the eNanoMapper ontology}
+        Assuming that we are interested in \emph{toxicological endpoints} we execute the template SPARQL query to receive results either as a static \emph{Dendogram} graph \emph{(Figure 1)} or as an interactive \emph{Sunburst} graph \emph{(Figure 2)}. To get all information about a subject we can use the SPARQL interface \emph{(Figure 4)} and write another query. We are always able to refine our query or investigate directly any kind of URIs from the result \emph{(Figure 5)}.
+        \begin{figure}
+          \hspace{-0.1\textwidth}
+          \begin{subfigure}[c]{0.35\textwidth}
+            \includegraphics[scale=0.75,keepaspectratio]{onto-use-case-1a.png}
+            \caption{Figure 2: Sunburst. Result for \emph{toxicological endpoint} search.}
+          \end{subfigure}
+          \hspace{0.15\textwidth}
+          \begin{subfigure}[c]{0.35\textwidth}
+            \includegraphics[scale=0.65,keepaspectratio]{onto-use-case-1b.png}
+            \caption{Figure 3: Sunburst. Interactive zoom on \emph{dermal toxicity} endpoint.}
+          \end{subfigure}
+        \end{figure}
+        \vspace{0.02\textwidth}
+        \begin{figure}
+          \hspace{-0.1\textwidth}
+          \begin{subfigure}[c]{0.35\textwidth}
+            \includegraphics[scale=0.5,keepaspectratio]{onto-use-case-1c.png}
+            \caption{Figure 4: SPARQL interface. Select \emph{skin sensitization} subclass endpoint from \emph{Figure 3} for a detail query.}
+          \end{subfigure}
+          \hspace{0.12\textwidth}
+          \begin{subfigure}[c]{0.35\textwidth}
+            \includegraphics[scale=0.6,keepaspectratio]{onto-use-case-1d.png}
+            \caption{Figure 5: Following a link from the query result in \emph{Figure 4} we reach the eNanoMapper ontology on BioPortal.}
+          \end{subfigure}
+        \end{figure}
       \end{block}
+    \end{textblock}
 
-      \begin{alertblock}{Highlighted Box}
-        \input{./markdown_blocks/exampletext}
-      \end{alertblock}
-
-      \begin{block}{Code}
-        \input{./markdown_blocks/code}
+        
+    \begin{textblock}{62}(20,70)
+      \justifying
+      \begin{block}{Use case 2: Investigate eNanoMapper data}
+        Assuming that we want to investigate eNanoMapper nano material data we can simply choose one of the given SPARQL examples \emph{(Figure 6)} as a starting point. In this case we are interested in \emph{surface charge} and search for the zeta potential and its values. We receive a table with values and resource identifiers which point us directly to the resource page of the eNanoMapper database service \emph{(Figure 7)}.
+        \begin{figure}
+          \vspace{0.01\textwidth}
+          \hspace{-0.15\textwidth}
+          \begin{subfigure}[c]{0.35\textwidth}
+            \includegraphics[scale=0.75,keepaspectratio]{onto-use-case-2a.png}
+            \caption{Figure 6: SPARQL interface. Select one of the \emph{physio-chemical characteristics} examples.}
+          \end{subfigure}
+          \hspace{0.12\textwidth}
+          \begin{subfigure}[c]{0.35\textwidth}
+            \vspace{0.1\textwidth}
+            \includegraphics[scale=0.75,keepaspectratio]{onto-use-case-2b.png}
+            \caption{Figure 7: Following a link from the query result in \emph{Figure 6} we reach the eNanoMapper database service.}
+          \end{subfigure}
+        \end{figure}
       \end{block}
-
+    \end{textblock}
+    
+    \begin{textblock}{39.5}(1,100)
       \begin{exampleblock}{Links}
-        \input{./markdown_blocks/services_links}
+        \input{./markdown_blocks/ontoviewer_links}
       \end{exampleblock}
+    \end{textblock}
 
+    \begin{textblock}{39.5}(42.5,100)
       \begin{block}{References}
         \small\bibliography{references}
       \end{block}
-
-    \end{textblock}
-
-    \begin{textblock}{82.1}(1,88)
-      \input{./markdown_blocks/exampletext}
     \end{textblock}
 
   \end{frame}