From bb7d9009a9be8a8f2244944885ed9fec5086e26c Mon Sep 17 00:00:00 2001 From: rautenberg Date: Thu, 26 Jan 2017 12:59:44 +0100 Subject: split integation Text to blocks --- markdown_blocks/integration_lazar-rest.md | 2 ++ markdown_blocks/integration_lazar.md | 3 +++ markdown_blocks/integration_nano-lazar.md | 3 +++ markdown_blocks/integration_ontoviewer.md | 2 ++ markdown_blocks/integration_rdf.md | 2 ++ markdown_blocks/integration_sparql.md | 2 ++ nmsa-ist-integration.tex | 42 ++++++++++++++++++++++--------- nmsa-ist-rest.tex | 6 ++--- nmsa-ist-services.tex | 12 ++++----- 9 files changed, 53 insertions(+), 21 deletions(-) create mode 100644 markdown_blocks/integration_lazar-rest.md create mode 100644 markdown_blocks/integration_lazar.md create mode 100644 markdown_blocks/integration_nano-lazar.md create mode 100644 markdown_blocks/integration_ontoviewer.md create mode 100644 markdown_blocks/integration_rdf.md create mode 100644 markdown_blocks/integration_sparql.md diff --git a/markdown_blocks/integration_lazar-rest.md b/markdown_blocks/integration_lazar-rest.md new file mode 100644 index 0000000..80c430b --- /dev/null +++ b/markdown_blocks/integration_lazar-rest.md @@ -0,0 +1,2 @@ + - Interacts with the `lazar` library (e.g. for toxicity predictions, model creation and validation, descriptor calculation) + - Will be maintained and developed in the FP7 OpenRiskNet project \ No newline at end of file diff --git a/markdown_blocks/integration_lazar.md b/markdown_blocks/integration_lazar.md new file mode 100644 index 0000000..49453ad --- /dev/null +++ b/markdown_blocks/integration_lazar.md @@ -0,0 +1,3 @@ + - Mirrors eNanoMapper data for read-across models + - Creates read-across predictions for the `nano-lazar` webinterface + - Responds to requests from the `lazar-rest` interface (e.g. nanoparticle predictions, model creation and validation, descriptor calculation) \ No newline at end of file diff --git a/markdown_blocks/integration_nano-lazar.md b/markdown_blocks/integration_nano-lazar.md new file mode 100644 index 0000000..341272b --- /dev/null +++ b/markdown_blocks/integration_nano-lazar.md @@ -0,0 +1,3 @@ + - Obtains nanoparticle toxicity predictions from the `lazar` library + - Uses ontologies (eNanoMapper, BioPortal, UniProt) to explain domain specific terms in the user interface + - Uses ontologies and eNanoMapper data as supporting information for read-across predictions \ No newline at end of file diff --git a/markdown_blocks/integration_ontoviewer.md b/markdown_blocks/integration_ontoviewer.md new file mode 100644 index 0000000..7ab7f99 --- /dev/null +++ b/markdown_blocks/integration_ontoviewer.md @@ -0,0 +1,2 @@ + - Sends SPARQL queries to the RDF store + - Visualises RDF response from the RDF store \ No newline at end of file diff --git a/markdown_blocks/integration_rdf.md b/markdown_blocks/integration_rdf.md new file mode 100644 index 0000000..dec5b8d --- /dev/null +++ b/markdown_blocks/integration_rdf.md @@ -0,0 +1,2 @@ + - Mirrors eNanoMapper data and ontologies + - Responds to SPARQL queries from the ontology viewer and the SPARQL interface diff --git a/markdown_blocks/integration_sparql.md b/markdown_blocks/integration_sparql.md new file mode 100644 index 0000000..158c0cd --- /dev/null +++ b/markdown_blocks/integration_sparql.md @@ -0,0 +1,2 @@ + - Sends SPARQL queries to the RDF store + - Receives SPARQL query results in different formats \ No newline at end of file diff --git a/nmsa-ist-integration.tex b/nmsa-ist-integration.tex index 2f473ff..2c35387 100644 --- a/nmsa-ist-integration.tex +++ b/nmsa-ist-integration.tex @@ -1,6 +1,6 @@ \documentclass[final]{beamer} \usetheme{IST} -\usepackage[orientation=portrait,size=a0,scale=1.3,debug]{beamerposter} % poster size +\usepackage[orientation=portrait,size=a0,scale=1.24,debug]{beamerposter} % poster size \usepackage[absolute,overlay]{textpos} \usepackage[utf8]{inputenc} @@ -21,38 +21,56 @@ \input{./markdown_blocks/integration_summary} \end{block} - \begin{exampleblock}{Links} - \input{./markdown_blocks/integration_links} - \end{exampleblock} - + \begin{block}{{\tt lazar} \cite{helma_2017}\cite{helma_christoph_2016_215483}} + \input{./markdown_blocks/integration_lazar} + \end{block} - \begin{block}{References} - \small\bibliography{references} + \begin{block}{{\tt nano-lazar} GUI \cite{gebele_denis_2017_250818}} + \input{./markdown_blocks/integration_nano-lazar} \end{block} \end{textblock} \begin{textblock}{40.5}(42.6,10) - \begin{block}{Integration details} - \input{./markdown_blocks/integration_text} + \begin{block}{{\tt nano-lazar} REST interface \cite{rautenberg_micha_2016_187328}} + \input{./markdown_blocks/integration_lazar-rest} + \end{block} + + \begin{block}{eNM {\tt ontology viewer} \cite{gebele_denis_2017_259384}} + \input{./markdown_blocks/integration_ontoviewer} + \end{block} + + \begin{block}{RDF store} + \input{./markdown_blocks/integration_rdf} + \end{block} + + \begin{block}{eNM SPARQL interface} + \input{./markdown_blocks/integration_sparql} \end{block} + \end{textblock} - \begin{textblock}{82.1}(1,50) + \begin{textblock}{82.1}(1,36) \input{./markdown_blocks/integration_diagram} \end{textblock} - \begin{textblock}{40.5}(1,82) + \begin{textblock}{40.5}(1,97) + \begin{exampleblock}{Links} + \input{./markdown_blocks/integration_links} + \end{exampleblock} \end{textblock} - \begin{textblock}{40.5}(42.6,82) + \begin{textblock}{40.5}(42.6,97) + \begin{block}{References} + \small\bibliography{references} + \end{block} \end{textblock} diff --git a/nmsa-ist-rest.tex b/nmsa-ist-rest.tex index 4f840f1..b8fc2df 100644 --- a/nmsa-ist-rest.tex +++ b/nmsa-ist-rest.tex @@ -22,7 +22,7 @@ \input{./markdown_blocks/rest_summary} \end{block} - \begin{block}{\tt{lazar}} + \begin{block}{{\tt lazar}} \justifying \input{./markdown_blocks/rest_lazar_description} \end{block} @@ -32,12 +32,12 @@ \input{./markdown_blocks/rest_rest} \end{block} - \begin{block}{\tt{lazar-rest} services} + \begin{block}{{\tt lazar-rest} services} \justifying \input{./markdown_blocks/rest_lazar-rest} \end{block} - \begin{block}{\tt{lazar-rest} Swagger interface} + \begin{block}{{\tt lazar-rest} Swagger interface} \vskip.2ex \input{./markdown_blocks/rest_swagger_ui} \vskip.2ex diff --git a/nmsa-ist-services.tex b/nmsa-ist-services.tex index 9ab14ef..9d42ba8 100644 --- a/nmsa-ist-services.tex +++ b/nmsa-ist-services.tex @@ -21,19 +21,19 @@ \input{./markdown_blocks/services_summary} \end{block} - \begin{block}{\tt{lazar}} + \begin{block}{{\tt lazar}} \input{./markdown_blocks/services_lazar} \end{block} - \begin{block}{\tt{nano-lazar}} + \begin{block}{{\tt nano-lazar}} \input{./markdown_blocks/services_nano-lazar} \end{block} - \begin{block}{\tt{nano-lazar}-paper} + \begin{block}{{\tt nano-lazar-paper}} \input{./markdown_blocks/services_nano-lazar-paper} \end{block} - \begin{block}{\tt{lazar-rest}} + \begin{block}{{\tt lazar-rest}} \input{./markdown_blocks/services_lazar-rest} \end{block} @@ -45,11 +45,11 @@ \begin{textblock}{40.5}(42.6,8.6) - \begin{block}{eNM ontoviewer} + \begin{block}{eNM {\tt ontology viewer}} \input{./markdown_blocks/services_ontoviewer} \end{block} - \begin{block}{\tt{qsar-report}} + \begin{block}{{\tt qsar-report}} \input{./markdown_blocks/services_qsar-report} \end{block} -- cgit v1.2.3