From df97cdcdbf261853bc67e6b2ee99dc48388a3351 Mon Sep 17 00:00:00 2001 From: gebele Date: Thu, 26 Jan 2017 14:12:35 +0100 Subject: fixed references;resized screenshots --- Makefile | 2 +- images/onto-use-case-1c.png | Bin 152458 -> 352388 bytes images/onto-use-case-1d.png | Bin 145698 -> 287085 bytes images/onto-use-case-2a.png | Bin 146003 -> 365632 bytes images/onto-use-case-2b.png | Bin 99471 -> 219944 bytes nmsa-ist-ontoviewer.tex | 45 ++++++++++++++++++++++---------------------- 6 files changed, 23 insertions(+), 24 deletions(-) diff --git a/Makefile b/Makefile index 60865ef..9ed0a78 100644 --- a/Makefile +++ b/Makefile @@ -29,7 +29,7 @@ nmsa-ist-ontoviewer: # $(BIBTEX) nmsa-ist-ontoviewer # $(PDFLATEX) nmsa-ist-ontoviewer.tex # $(PDFLATEX) nmsa-ist-ontoviewer.tex - ./dockercmd.sh /bin/sh -c "./md2tex.sh nmsa-ist-ontoviewer.tex && pdflatex nmsa-ist-ontoviewer.tex" + ./dockercmd.sh /bin/sh -c "./md2tex.sh nmsa-ist-ontoviewer.tex && pdflatex -shell-escape nmsa-ist-ontoviewer.tex && bibtex nmsa-ist-ontoviewer && pdflatex -shell-escape nmsa-ist-ontoviewer.tex && pdflatex -shell-escape nmsa-ist-ontoviewer.tex" # Poster enm-integration nmsa-ist-integration: diff --git a/images/onto-use-case-1c.png b/images/onto-use-case-1c.png index 61e8230..364d622 100644 Binary files a/images/onto-use-case-1c.png and b/images/onto-use-case-1c.png differ diff --git a/images/onto-use-case-1d.png b/images/onto-use-case-1d.png index 7c1c907..2bc21c0 100644 Binary files a/images/onto-use-case-1d.png and b/images/onto-use-case-1d.png differ diff --git a/images/onto-use-case-2a.png b/images/onto-use-case-2a.png index 9226bb2..71d43e4 100644 Binary files a/images/onto-use-case-2a.png and b/images/onto-use-case-2a.png differ diff --git a/images/onto-use-case-2b.png b/images/onto-use-case-2b.png index ef68f29..5d5002f 100644 Binary files a/images/onto-use-case-2b.png and b/images/onto-use-case-2b.png differ diff --git a/nmsa-ist-ontoviewer.tex b/nmsa-ist-ontoviewer.tex index ad6f4e3..72040f9 100644 --- a/nmsa-ist-ontoviewer.tex +++ b/nmsa-ist-ontoviewer.tex @@ -36,28 +36,27 @@ \begin{block}{Use case 1: Investigate the eNanoMapper ontology} Assuming that we are interested in \emph{toxicological endpoints} we execute the template SPARQL query to receive results either as a static \emph{Dendogram} graph \emph{(Figure 1)} or as an interactive \emph{Sunburst} graph \emph{(Figure 2)}. To get all information about a subject we can use the SPARQL interface \emph{(Figure 4)} and write another query. We are always able to refine our query or investigate directly any kind of URIs from the result \emph{(Figure 5)}. \begin{figure} - \hspace{-0.15\textwidth} - \begin{subfigure}[c]{0.3\textwidth} - \includegraphics[width=\textwidth,keepaspectratio]{onto-use-case-1a.png} + \hspace{-0.1\textwidth} + \begin{subfigure}[c]{0.35\textwidth} + \includegraphics[scale=0.75,keepaspectratio]{onto-use-case-1a.png} \caption{Figure 2: Sunburst. Result for \emph{toxicological endpoint} search.} \end{subfigure} - \hspace{0.25\textwidth} - \begin{subfigure}[c]{0.2\textwidth} - \includegraphics[width=\textwidth,keepaspectratio]{onto-use-case-1b.png} + \hspace{0.15\textwidth} + \begin{subfigure}[c]{0.35\textwidth} + \includegraphics[scale=0.65,keepaspectratio]{onto-use-case-1b.png} \caption{Figure 3: Sunburst. Interactive zoom on \emph{dermal toxicity} endpoint.} \end{subfigure} \end{figure} - \vspace{0.05\textwidth} + \vspace{0.02\textwidth} \begin{figure} - %\centering \hspace{-0.1\textwidth} - \begin{subfigure}[c]{0.3\textwidth} - \includegraphics[width=\textwidth,keepaspectratio]{onto-use-case-1c.png} + \begin{subfigure}[c]{0.35\textwidth} + \includegraphics[scale=0.5,keepaspectratio]{onto-use-case-1c.png} \caption{Figure 4: SPARQL interface. Select \emph{skin sensitization} subclass endpoint from \emph{Figure 3} for a detail query.} \end{subfigure} - \hspace{0.2\textwidth} - \begin{subfigure}[c]{0.3\textwidth} - \includegraphics[width=\textwidth,keepaspectratio]{onto-use-case-1d.png} + \hspace{0.12\textwidth} + \begin{subfigure}[c]{0.35\textwidth} + \includegraphics[scale=0.6,keepaspectratio]{onto-use-case-1d.png} \caption{Figure 5: Following a link from the query result in \emph{Figure 4} we reach the eNanoMapper ontology on BioPortal.} \end{subfigure} \end{figure} @@ -70,29 +69,29 @@ \begin{block}{Use case 2: Investigate eNanoMapper data} Assuming that we want to investigate eNanoMapper nano material data we can simply choose one of the given SPARQL examples \emph{(Figure 6)} as a starting point. In this case we are interested in \emph{surface charge} and search for the zeta potential and its values. We receive a table with values and resource identifiers which point us directly to the resource page of the eNanoMapper database service \emph{(Figure 7)}. \begin{figure} - %\centering - \vspace{0.05\textwidth} - \hspace{-0.1\textwidth} - \begin{subfigure}[c]{0.3\textwidth} - \includegraphics[width=\textwidth,keepaspectratio]{onto-use-case-2a.png} + \vspace{0.01\textwidth} + \hspace{-0.15\textwidth} + \begin{subfigure}[c]{0.35\textwidth} + \includegraphics[scale=0.75,keepaspectratio]{onto-use-case-2a.png} \caption{Figure 6: SPARQL interface. Select one of the \emph{physio-chemical characteristics} examples.} \end{subfigure} - \hspace{0.2\textwidth} - \begin{subfigure}[c]{0.4\textwidth} - \includegraphics[width=\textwidth,keepaspectratio]{onto-use-case-2b.png} + \hspace{0.12\textwidth} + \begin{subfigure}[c]{0.35\textwidth} + \vspace{0.1\textwidth} + \includegraphics[scale=0.75,keepaspectratio]{onto-use-case-2b.png} \caption{Figure 7: Following a link from the query result in \emph{Figure 6} we reach the eNanoMapper database service.} \end{subfigure} \end{figure} \end{block} \end{textblock} - \begin{textblock}{40}(1,100) + \begin{textblock}{39.5}(1,100) \begin{exampleblock}{Links} \input{./markdown_blocks/ontoviewer_links} \end{exampleblock} \end{textblock} - \begin{textblock}{40}(42.5,100) + \begin{textblock}{39.5}(42.5,100) \begin{block}{References} \small\bibliography{references} \end{block} -- cgit v1.2.3