\documentclass[final]{beamer} \usetheme{IST} \usepackage[orientation=portrait,size=a0,scale=1.4,debug]{beamerposter} % poster size \usepackage[absolute,overlay]{textpos} \usepackage[utf8]{inputenc} \usepackage{graphicx,caption,subcaption,float,lipsum} \captionsetup[subfigure]{labelformat=empty} \graphicspath{ {./images/} } \setlength{\TPHorizModule}{1cm} \setlength{\TPVertModule}{1cm} \title{eNM-Ontoviewer: Interactive visualisation of SPARQL queries for eNanoMapper ontologies and data} \author{D. Gebele, M. Rautenberg, C. Helma} \institute{\emph{in silico} toxicology gmbh, Basel, Switzerland} \footer{Contact: \texttt{support@in-silico.ch}. Information: \texttt{www.in-silico.ch}} \begin{document} \begin{frame}{} \begin{textblock}{81.5}(1,12) \justifying \input{./markdown_blocks/ontoviewer_summary} \end{textblock} \begin{textblock}{30}(1,20) \includegraphics[scale=0.35,trim={20cm 0 0 0},clip]{onto-viewer-dendogram-1.png} \end{textblock} \begin{textblock}{40}(3,96) \small Figure 1: Dendogram \end{textblock} \begin{textblock}{63}(20,18) \justifying \begin{block}{Use case 1: Investigate the eNanoMapper ontology} Assuming that we are interested in \emph{toxicological endpoints} we execute the template SPARQL query to receive results either as a static \emph{Dendogram} graph \emph{(Figure 1)} or as an interactive \emph{Sunburst} graph \emph{(Figure 2)}. To get all information about a subject we can use the SPARQL interface \emph{(Figure 4)} and write another query. We are always able to refine our query or investigate directly any kind of URIs from the result \emph{(Figure 5)}. \begin{figure} \hspace{-0.1\textwidth} \begin{subfigure}[c]{0.35\textwidth} \includegraphics[scale=0.75,keepaspectratio]{onto-use-case-1a.png} \caption{Figure 2: Sunburst. Result for \emph{toxicological endpoint} search.} \end{subfigure} \hspace{0.15\textwidth} \begin{subfigure}[c]{0.35\textwidth} \includegraphics[scale=0.65,keepaspectratio]{onto-use-case-1b.png} \caption{Figure 3: Sunburst. Interactive zoom on \emph{dermal toxicity} endpoint.} \end{subfigure} \end{figure} \vspace{0.02\textwidth} \begin{figure} \hspace{-0.1\textwidth} \begin{subfigure}[c]{0.35\textwidth} \includegraphics[scale=0.5,keepaspectratio]{onto-use-case-1c.png} \caption{Figure 4: SPARQL interface. Select \emph{skin sensitization} subclass endpoint from \emph{Figure 3} for a detail query.} \end{subfigure} \hspace{0.12\textwidth} \begin{subfigure}[c]{0.35\textwidth} \includegraphics[scale=0.6,keepaspectratio]{onto-use-case-1d.png} \caption{Figure 5: Following a link from the query result in \emph{Figure 4} we reach the eNanoMapper ontology on BioPortal.} \end{subfigure} \end{figure} \end{block} \end{textblock} \begin{textblock}{63}(20,70) \justifying \begin{block}{Use case 2: Investigate eNanoMapper data} Assuming that we want to investigate eNanoMapper nano material data we can simply choose one of the given SPARQL examples \emph{(Figure 6)} as a starting point. In this case we are interested in \emph{surface charge} and search for the zeta potential and its values. We receive a table with values and resource identifiers which point us directly to the resource page of the eNanoMapper database service \emph{(Figure 7)}. \begin{figure} \vspace{0.01\textwidth} \hspace{-0.15\textwidth} \begin{subfigure}[c]{0.35\textwidth} \includegraphics[scale=0.75,keepaspectratio]{onto-use-case-2a.png} \caption{Figure 6: SPARQL interface. Select one of the \emph{physio-chemical characteristics} examples.} \end{subfigure} \hspace{0.12\textwidth} \begin{subfigure}[c]{0.35\textwidth} \vspace{0.1\textwidth} \includegraphics[scale=0.75,keepaspectratio]{onto-use-case-2b.png} \caption{Figure 7: Following a link from the query result in \emph{Figure 6} we reach the eNanoMapper database service.} \end{subfigure} \end{figure} \end{block} \end{textblock} \begin{textblock}{39.5}(1,100) \begin{exampleblock}{Links} \input{./markdown_blocks/ontoviewer_links} \end{exampleblock} \end{textblock} \begin{textblock}{40.5}(42.5,100) \begin{block}{References} \small\bibliography{references} \end{block} \end{textblock} \end{frame} \end{document}