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authorgebele <gebele@in-silico.ch>2018-05-07 12:40:45 +0200
committergebele <gebele@in-silico.ch>2018-05-07 12:40:45 +0200
commit9f3dbafd5fd8d80eae529354efcef94aec8f7d48 (patch)
tree192e5ac3fac868f7fe5ca5c7a21167883d949ebf
parent3ecd85f1fd7c397d8544be61ba9c3dcc3ff301fe (diff)
parent909b34b31d71671b5e5a660cb78b5f1bc1a88b8b (diff)
Merge branch 'development' of https://github.com/opentox/lazar-rest into developmentdevelopment
-rw-r--r--api/api.json9
-rw-r--r--config.ru3
-rw-r--r--lib/api.rb4
-rw-r--r--lib/swagger.rb4
4 files changed, 8 insertions, 12 deletions
diff --git a/api/api.json b/api/api.json
index 7777f1e..23dd1cc 100644
--- a/api/api.json
+++ b/api/api.json
@@ -709,7 +709,7 @@
"descriptor"
],
"summary": "Descriptor calculation",
- "description": "Calculate descriptors for a single compound as SMILES string <br> <strong>curl example:</strong> <pre>curl -Lk -X POST -i -H \"Accept:application/json\" -F \"identifier=O=C1NC(=O)NC=C1\" -F \"descriptor=Openbabel.MW,JoeLib.LogP\" https://api.in-silico.ch/compound/descriptor </pre>.",
+ "description": "Calculate descriptors for a single compound as SMILES string <br> <strong>curl example:</strong> <pre>curl -Lk -X POST -i -H \"Accept:application/json\" -F \"identifier=O=C1NC(=O)NC=C1\" -F \"descriptor=Openbabel.MW,Openbabel.atoms\" https://api.in-silico.ch/compound/descriptor </pre>.",
"consumes": [
"multipart/form-data"
],
@@ -724,12 +724,9 @@
{
"name": "descriptor",
"in": "formData",
- "description": "array of descriptors",
+ "description": "list of comma seperated descriptors",
"required": true,
- "type": "array",
- "items": {
- "type": "string"
- }
+ "type": "string"
},
{
"$ref": "#/parameters/subjectid"
diff --git a/config.ru b/config.ru
index 1dd7b70..fe7962c 100644
--- a/config.ru
+++ b/config.ru
@@ -1,5 +1,4 @@
-SERVICE = "lazar-rest"
require 'bundler'
Bundler.require
require File.expand_path './lib/lazar-rest.rb'
-run Sinatra::Application \ No newline at end of file
+run Sinatra::Application
diff --git a/lib/api.rb b/lib/api.rb
index 98623dc..28e33df 100644
--- a/lib/api.rb
+++ b/lib/api.rb
@@ -2,8 +2,8 @@
get "/api/api.json" do
response['Content-Type'] = "application/json"
api_file = File.join("api", "api.json")
- bad_request_error "API Documentation in Swagger JSON is not implemented.", uri("/#{SERVICE}/api") unless File.exists?(api_file)
+ bad_request_error "API Documentation in Swagger JSON is not implemented." unless File.exists?(api_file)
api_hash = JSON.parse(File.read(api_file))
api_hash["host"] = request.env['HTTP_HOST']
return api_hash.to_json
-end \ No newline at end of file
+end
diff --git a/lib/swagger.rb b/lib/swagger.rb
index f6b42b2..9fa14f7 100644
--- a/lib/swagger.rb
+++ b/lib/swagger.rb
@@ -2,7 +2,7 @@ set :public_folder, File.join("/home/ist/swagger-ui/dist/")
# route to swagger API file
get "/" do
response['Content-Type'] = "text/html"
- index_file = File.join("/home/ist/swagger-ui/dist/index.html")
- bad_request_error "API Documentation in Swagger JSON is not implemented.", uri("/#{SERVICE}/api") unless File.exists?(index_file)
+ index_file = File.join(ENV['HOME'],"swagger-ui/dist/index.html")
+ bad_request_error "API Documentation in Swagger JSON is not implemented." unless File.exists?(index_file)
File.read(index_file)
end