diff options
author | Christoph Helma <helma@in-silico.ch> | 2016-10-07 13:53:26 +0200 |
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committer | Christoph Helma <helma@in-silico.ch> | 2016-10-07 13:53:26 +0200 |
commit | 1ec5ad2c67f270287499980a794e51bc9a6bbd84 (patch) | |
tree | a06dae70d483bc109f9e08b3bb59191e91288719 | |
parent | 398a59885845a49cfda4b37b7058f8a47d11c6d2 (diff) |
README.md updated
-rw-r--r-- | README.md | 18 | ||||
-rw-r--r-- | VERSION | 2 |
2 files changed, 5 insertions, 15 deletions
@@ -6,31 +6,21 @@ Ruby libraries for the lazar framework Dependencies ------------ - lazar depends on a couple of external programs and libraries. On Debian 7 "Wheezy" systems you can install them with - - `sudo apt-get install build-essential ruby ruby-dev git cmake swig r-base r-base-dev r-cran-rserve openjdk-7-jre libgsl0-dev libxml2-dev zlib1g-dev libcairo2-dev` - - You will also need at least mongodb version 3.0, but Debian "Wheezy" provides version 2.4. Please follow the instructions at http://docs.mongodb.org/manual/tutorial/install-mongodb-on-debian/: - - ``` - sudo apt-key adv --keyserver keyserver.ubuntu.com --recv 7F0CEB10 - echo "deb http://repo.mongodb.org/apt/debian wheezy/mongodb-org/3.0 main" | sudo tee /etc/apt/sources.list.d/mongodb-org-3.0.list - sudo apt-get update - sudo apt-get install -y mongodb-org - ``` + lazar depends on a couple of external programs and libraries. All required libraries will be installed with the `gem install lazar` command. + If any of the dependencies fails to install, please check if all required development packages are installed from your operating systems package manager (e.g. `apt`, `rpm`, `pacman`, ...). + You will need a working Java runtime to use descriptor calculation algorithms from CDK and JOELib libraries. Installation ------------ `gem install lazar` - Please be patient, the compilation of OpenBabel and Fminer libraries can be very time consuming. If installation fails you can try to install manually: + Please be patient, the compilation of external libraries can be very time consuming. If installation fails you can try to install manually: ``` git clone https://github.com/opentox/lazar.git cd lazar ruby ext/lazar/extconf.rb - sudo Rscript ext/lazar/rinstall.R bundle install ``` @@ -1 +1 @@ -0.9.3 +1.0.0 |