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authorChristoph Helma <helma@in-silico.ch>2016-10-07 13:53:26 +0200
committerChristoph Helma <helma@in-silico.ch>2016-10-07 13:53:26 +0200
commit1ec5ad2c67f270287499980a794e51bc9a6bbd84 (patch)
treea06dae70d483bc109f9e08b3bb59191e91288719 /README.md
parent398a59885845a49cfda4b37b7058f8a47d11c6d2 (diff)
README.md updated
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@@ -6,31 +6,21 @@ Ruby libraries for the lazar framework
Dependencies
------------
- lazar depends on a couple of external programs and libraries. On Debian 7 "Wheezy" systems you can install them with
-
- `sudo apt-get install build-essential ruby ruby-dev git cmake swig r-base r-base-dev r-cran-rserve openjdk-7-jre libgsl0-dev libxml2-dev zlib1g-dev libcairo2-dev`
-
- You will also need at least mongodb version 3.0, but Debian "Wheezy" provides version 2.4. Please follow the instructions at http://docs.mongodb.org/manual/tutorial/install-mongodb-on-debian/:
-
- ```
- sudo apt-key adv --keyserver keyserver.ubuntu.com --recv 7F0CEB10
- echo "deb http://repo.mongodb.org/apt/debian wheezy/mongodb-org/3.0 main" | sudo tee /etc/apt/sources.list.d/mongodb-org-3.0.list
- sudo apt-get update
- sudo apt-get install -y mongodb-org
- ```
+ lazar depends on a couple of external programs and libraries. All required libraries will be installed with the `gem install lazar` command.
+ If any of the dependencies fails to install, please check if all required development packages are installed from your operating systems package manager (e.g. `apt`, `rpm`, `pacman`, ...).
+ You will need a working Java runtime to use descriptor calculation algorithms from CDK and JOELib libraries.
Installation
------------
`gem install lazar`
- Please be patient, the compilation of OpenBabel and Fminer libraries can be very time consuming. If installation fails you can try to install manually:
+ Please be patient, the compilation of external libraries can be very time consuming. If installation fails you can try to install manually:
```
git clone https://github.com/opentox/lazar.git
cd lazar
ruby ext/lazar/extconf.rb
- sudo Rscript ext/lazar/rinstall.R
bundle install
```