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authorChristoph Helma <helma@in-silico.ch>2015-08-19 12:57:23 +0200
committerChristoph Helma <helma@in-silico.ch>2015-08-19 12:57:23 +0200
commit36e10aa98a3d19a78a1889857262abe338a05eef (patch)
tree38ac1c2e03ade553ea3402d79934c295e76ce6c9 /README.md
parent4067d78c78c1f503b5f21d043ece8042260a3d78 (diff)
libfminer rpath fixed, installation instructions
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-opentox-client
-====================
-
-Thin Ruby wrapper for the [OpenTox](http://www.opentox.org) REST API
-
-Libraries:
-
-* {OpenTox::Algorithm} Wrapper for OpenTox Algorithms
-* {OpenTox::Authorization} Authorization and Authentication
-* {OpenTox::Compound} Compound Library
-* {OpenTox::Dataset} Dataset Library
-* {OpenTox::Error} extends Exception class according the OpenTox API
-* {OpenTox::Model} Model Library
-* {OpenTox} OpenTox Library - general definition of OpenTox objects
-* {OTLogger} OpenTox Logger Extensions
-* {OpenTox::Policies} parse and serialize XML for the openSSO A&A server
-* {OpenTox::RestClientWrapper} wrapper for the RestClient gem
-* {OpenTox::Task} Task Library
+lazar
+=====
+Ruby libraries for the lazar framework
Dependencies
------------
- libraptor1-dev
+ lazar depends on a couple of external programs and libraries. On Debian 7 "Wheezy" systems you can install them with
+
+ `sudo apt-get install build-essential ruby ruby-dev git cmake swig r-base r-base-dev r-cran-rserve openjdk-7-jre libgsl0-dev libxml2-dev zlib1g-dev libcairo2-dev`
+
+ You will also need at least mongodb version 3.0, but Debian "Wheezy" provides version 2.4. Please follow the instructions at http://docs.mongodb.org/manual/tutorial/install-mongodb-on-debian/:
+
+ ```
+ sudo apt-key adv --keyserver keyserver.ubuntu.com --recv 7F0CEB10
+ echo "deb http://repo.mongodb.org/apt/debian wheezy/mongodb-org/3.0 main" | sudo tee /etc/apt/sources.list.d/mongodb-org-3.0.list
+ sudo apt-get update
+ sudo apt-get install -y mongodb-org
+ ```
Installation
------------
- gem install opentox-client
+ gem install lazar
Documentation
-------------
-* [API documentation](http://rdoc.info/gems/opentox-client)
-* [RubyDoc.info Code documentation](http://rubydoc.info/github/opentox/opentox-client/development/frames)
+* [API documentation](http://rdoc.info/gems/lazar)
Copyright
---------
-Copyright (c) 2009-2014 Christoph Helma, Martin Guetlein, Micha Rautenberg, Andreas Maunz, David Vorgrimmler, Denis Gebele. See LICENSE for details.
+Copyright (c) 2009-2015 Christoph Helma, Martin Guetlein, Micha Rautenberg, Andreas Maunz, David Vorgrimmler, Denis Gebele. See LICENSE for details.