diff options
| author | gebele <gebele@in-silico.ch> | 2016-12-12 09:15:48 +0000 |
|---|---|---|
| committer | gebele <gebele@in-silico.ch> | 2016-12-12 09:15:48 +0000 |
| commit | da086fad5b45c0d7b59feb40d0108ac620613933 (patch) | |
| tree | 7e9cf8c9332e30552ab255ee9b30e04e904977b4 /ext/lazar | |
| parent | 32a16d99b51642cac8e75f90c43753d8d05ab770 (diff) | |
| parent | 4570f11444bc10da88d849e9a2812e95a8933c8a (diff) | |
merged development
Diffstat (limited to 'ext/lazar')
| -rw-r--r-- | ext/lazar/extconf.rb | 2 | ||||
| -rw-r--r-- | ext/lazar/rinstall.R | 15 |
2 files changed, 9 insertions, 8 deletions
diff --git a/ext/lazar/extconf.rb b/ext/lazar/extconf.rb index d3d2756..9997106 100644 --- a/ext/lazar/extconf.rb +++ b/ext/lazar/extconf.rb @@ -15,7 +15,7 @@ abort "Please install Rserve on your system. Execute 'install.packages('Rserve') # install R packages r_dir = File.join main_dir, "R" FileUtils.mkdir_p r_dir -FileUtils.mkdir_p File.join(main_dir,"bin") # for Rserve binary +#FileUtils.mkdir_p File.join(main_dir,"bin") # for Rserve binary rinstall = File.expand_path(File.join(File.dirname(__FILE__),"rinstall.R")) puts `Rscript --vanilla #{rinstall} #{r_dir}` diff --git a/ext/lazar/rinstall.R b/ext/lazar/rinstall.R index 62595d3..7023f60 100644 --- a/ext/lazar/rinstall.R +++ b/ext/lazar/rinstall.R @@ -1,10 +1,11 @@ libdir = commandArgs(trailingOnly=TRUE)[1] repo = "https://stat.ethz.ch/CRAN/" #install.packages("Rserve",lib=libdir,repos=repo,dependencies=TRUE) -install.packages("iterators",lib=libdir,repos=repo); -install.packages("foreach",lib=libdir,repos=repo); -install.packages("gridExtra",lib=libdir,repos=repo); -install.packages("ggplot2",lib=libdir,repos=repo); -install.packages("pls",lib=libdir,repos=repo); -install.packages("caret",lib=libdir,repos=repo); -install.packages("doMC",lib=libdir,repos=repo); +install.packages("iterators",lib=libdir,repos=repo,dependencies=TRUE); +install.packages("foreach",lib=libdir,repos=repo,dependencies=TRUE); +install.packages("gridExtra",lib=libdir,repos=repo,dependencies=TRUE); +install.packages("ggplot2",lib=libdir,repos=repo,dependencies=TRUE); +install.packages("pls",lib=libdir,repos=repo,dependencies=TRUE); +install.packages("randomForest",lib=libdir,repos=repo,dependencies=TRUE); +install.packages("caret",lib=libdir,repos=repo,dependencies=TRUE); +install.packages("doMC",lib=libdir,repos=repo,dependencies=TRUE); |