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authorChristoph Helma <helma@in-silico.ch>2016-05-12 15:23:01 +0200
committerChristoph Helma <helma@in-silico.ch>2016-05-12 15:23:01 +0200
commitb8bb12c8a163c238d7d4387c1914e2100bb660df (patch)
tree791d1524e2294d8a3a38658607a644d7576784ae /ext
parent937bfbaf058aea5973927cb3bf6b51028b312ed9 (diff)
enm study import fixed
Diffstat (limited to 'ext')
-rw-r--r--ext/lazar/extconf.rb2
-rw-r--r--ext/lazar/rinstall.R14
2 files changed, 8 insertions, 8 deletions
diff --git a/ext/lazar/extconf.rb b/ext/lazar/extconf.rb
index d3d2756..9997106 100644
--- a/ext/lazar/extconf.rb
+++ b/ext/lazar/extconf.rb
@@ -15,7 +15,7 @@ abort "Please install Rserve on your system. Execute 'install.packages('Rserve')
# install R packages
r_dir = File.join main_dir, "R"
FileUtils.mkdir_p r_dir
-FileUtils.mkdir_p File.join(main_dir,"bin") # for Rserve binary
+#FileUtils.mkdir_p File.join(main_dir,"bin") # for Rserve binary
rinstall = File.expand_path(File.join(File.dirname(__FILE__),"rinstall.R"))
puts `Rscript --vanilla #{rinstall} #{r_dir}`
diff --git a/ext/lazar/rinstall.R b/ext/lazar/rinstall.R
index 62595d3..52b0d45 100644
--- a/ext/lazar/rinstall.R
+++ b/ext/lazar/rinstall.R
@@ -1,10 +1,10 @@
libdir = commandArgs(trailingOnly=TRUE)[1]
repo = "https://stat.ethz.ch/CRAN/"
#install.packages("Rserve",lib=libdir,repos=repo,dependencies=TRUE)
-install.packages("iterators",lib=libdir,repos=repo);
-install.packages("foreach",lib=libdir,repos=repo);
-install.packages("gridExtra",lib=libdir,repos=repo);
-install.packages("ggplot2",lib=libdir,repos=repo);
-install.packages("pls",lib=libdir,repos=repo);
-install.packages("caret",lib=libdir,repos=repo);
-install.packages("doMC",lib=libdir,repos=repo);
+install.packages("iterators",lib=libdir,repos=repo,dependencies=TRUE);
+install.packages("foreach",lib=libdir,repos=repo,dependencies=TRUE);
+install.packages("gridExtra",lib=libdir,repos=repo,dependencies=TRUE);
+install.packages("ggplot2",lib=libdir,repos=repo,dependencies=TRUE);
+install.packages("pls",lib=libdir,repos=repo,dependencies=TRUE);
+install.packages("caret",lib=libdir,repos=repo,dependencies=TRUE);
+install.packages("doMC",lib=libdir,repos=repo,dependencies=TRUE);