Set nu to 0.5

1 files changed, 1 insertions, 2 deletions

diff --git a/lib/algorithm.rb b/lib/algorithm.rb
index 4cb80e3..fb5fd7f 100644
--- a/lib/algorithm.rb
+++ b/lib/algorithm.rb
@@ -178,7 +178,6 @@ module OpenTox
 
         sims = neighbors.collect{ |n| Algorithm.gauss(n[:similarity]) } # similarity values btwn q and nbors
         prediction = local_svm(neighbors, acts, sims, "svr", params)
-        LOGGER.debug "Prediction is: '" + prediction.to_s + "'."
         prediction = (take_logs ? 10**(prediction.to_f) : prediction.to_f)
         LOGGER.debug "Prediction is: '" + prediction.to_s + "'."
 
@@ -254,7 +253,7 @@ module OpenTox
             
             # model + support vectors
             LOGGER.debug "Creating SVM model ..."
-            @r.eval "model<-ksvm(gram_matrix, y, kernel=matrix, type=\"nu-#{type}\", nu=0.8)"
+            @r.eval "model<-ksvm(gram_matrix, y, kernel=matrix, type=\"nu-#{type}\", nu=0.5)"
             @r.eval "sv<-as.vector(SVindex(model))"
             @r.eval "sims<-sims[sv]"
             @r.eval "sims<-as.kernelMatrix(matrix(sims,1))"