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authorChristoph Helma <helma@in-silico.ch>2017-01-11 16:00:07 +0100
committerChristoph Helma <helma@in-silico.ch>2017-01-11 16:00:07 +0100
commit85553b339acf3f9285a1c03b2fff342d9ddb9b6b (patch)
treea00b5879578ed07ed2bea7b67c8da3896b43bc5d /lib/caret.rb
parentf522a1089af8775798450b3f9f0aa4b579a3e1b5 (diff)
documentation for all classes
Diffstat (limited to 'lib/caret.rb')
-rw-r--r--lib/caret.rb13
1 files changed, 11 insertions, 2 deletions
diff --git a/lib/caret.rb b/lib/caret.rb
index 7e4f771..f5c2bde 100644
--- a/lib/caret.rb
+++ b/lib/caret.rb
@@ -1,9 +1,17 @@
module OpenTox
module Algorithm
+ # Ruby interface for the R caret package
+ # Caret model list: https://topepo.github.io/caret/modelList.html
class Caret
- # model list: https://topepo.github.io/caret/modelList.html
+ # Create a local R caret model and make a prediction
+ # @param [Array<Float,Bool>] dependent_variables
+ # @param [Array<Array<Float,Bool>>] independent_variables
+ # @param [Array<Float>] weights
+ # @param [String] Caret method
+ # @param [Array<Float,Bool>] query_variables
+ # @return [Hash]
def self.create_model_and_predict dependent_variables:, independent_variables:, weights:, method:, query_variables:
remove = []
# remove independent_variables with single values
@@ -77,12 +85,13 @@ module OpenTox
end
- # call caret methods dynamically, e.g. Caret.pls
+ # Call caret methods dynamically, e.g. Caret.pls
def self.method_missing(sym, *args, &block)
args.first[:method] = sym.to_s
self.create_model_and_predict args.first
end
+ # Convert Ruby values to R values
def self.to_r v
return "F" if v == false
return "T" if v == true