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author | helma@in-silico.ch <helma@in-silico.ch> | 2018-10-29 17:58:09 +0100 |
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committer | helma@in-silico.ch <helma@in-silico.ch> | 2018-10-29 17:58:09 +0100 |
commit | 5e9a08c0b534fa96179fb5c81a9b4193e7b0aad8 (patch) | |
tree | a9d97dc520f51b5bca61b5f0122a1f86817e1ea8 /lib/crossvalidation.rb | |
parent | 15f4ad23eb918a91d52779887ccfb51bc6547f1b (diff) |
dataset folds fixed
Diffstat (limited to 'lib/crossvalidation.rb')
-rw-r--r-- | lib/crossvalidation.rb | 16 |
1 files changed, 7 insertions, 9 deletions
diff --git a/lib/crossvalidation.rb b/lib/crossvalidation.rb index 2e44ff2..4f61ff4 100644 --- a/lib/crossvalidation.rb +++ b/lib/crossvalidation.rb @@ -29,16 +29,14 @@ module OpenTox training_dataset = model.training_dataset training_dataset.folds(n).each_with_index do |fold,fold_nr| #fork do # parallel execution of validations can lead to Rserve and memory problems - $logger.debug "Dataset #{training_dataset.name}: Fold #{fold_nr} started" - t = Time.now - validation = TrainTest.create(model, fold[0], fold[1]) - cv.validation_ids << validation.id - cv.nr_instances += validation.nr_instances - cv.nr_unpredicted += validation.nr_unpredicted - $logger.debug "Dataset #{training_dataset.name}, Fold #{fold_nr}: #{Time.now-t} seconds" - #end + $logger.debug "Dataset #{training_dataset.name}: Fold #{fold_nr} started" + t = Time.now + validation = TrainTest.create(model, fold[0], fold[1]) + cv.validation_ids << validation.id + cv.nr_instances += validation.nr_instances + cv.nr_unpredicted += validation.nr_unpredicted + $logger.debug "Dataset #{training_dataset.name}, Fold #{fold_nr}: #{Time.now-t} seconds" end - #Process.waitall cv.save $logger.debug "Nr unpredicted: #{cv.nr_unpredicted}" cv.statistics |