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authorChristoph Helma <helma@in-silico.ch>2015-08-25 17:20:55 +0200
committerChristoph Helma <helma@in-silico.ch>2015-08-25 17:20:55 +0200
commitf8faf510b4574df1a00fa61a9f0a1681fc2f4857 (patch)
treeacdbe6666ca5f528be368c6f9fdf4d7fb51d031e /lib/lazar.rb
parent8c6c59980bc82dc2177147f2fe34adf8bfbc1539 (diff)
Experiments added
Diffstat (limited to 'lib/lazar.rb')
-rw-r--r--lib/lazar.rb6
1 files changed, 3 insertions, 3 deletions
diff --git a/lib/lazar.rb b/lib/lazar.rb
index d0128b7..5903556 100644
--- a/lib/lazar.rb
+++ b/lib/lazar.rb
@@ -16,7 +16,6 @@ ENV["MONGOID_ENV"] ||= "development"
# TODO remove config files, change default via ENV or directly in Mongoid class
Mongoid.load!("#{File.expand_path(File.join(File.dirname(__FILE__),'..','mongoid.yml'))}")
$mongo = Mongoid.default_client
-#$mongo = Mongo::Client.new('mongodb://127.0.0.1:27017/opentox')
$gridfs = $mongo.database.fs
# R setup
@@ -26,8 +25,8 @@ R = Rserve::Connection.new
STDOUT.sync = true # for redirection, etc see http://stackoverflow.com/questions/8549443/why-doesnt-logger-output-to-stdout-get-redirected-to-files
$logger = Logger.new STDOUT # STDERR did not work on my development machine (CH)
$logger.level = Logger::DEBUG
-Mongo::Logger.logger = $logger
Mongo::Logger.level = Logger::WARN
+#Mongo::Logger.logger = $logger
# Require sub-Repositories
require_relative '../libfminer/libbbrc/bbrc' # include before openbabel
@@ -43,7 +42,7 @@ ENV['FMINER_SILENT'] = 'true'
ENV['FMINER_NR_HITS'] = 'true'
# OpenTox classes and includes
-CLASSES = ["Feature","Compound","Dataset","Validation","CrossValidation"]# Algorithm and Models are modules
+CLASSES = ["Feature","Compound","Dataset","Validation","CrossValidation","Experiment"]# Algorithm and Models are modules
[ # be aware of the require sequence as it affects class/method overwrites
"overwrite.rb",
@@ -64,5 +63,6 @@ CLASSES = ["Feature","Compound","Dataset","Validation","CrossValidation"]# Algor
"regression.rb",
"validation.rb",
"crossvalidation.rb",
+ "experiment.rb",
].each{ |f| require_relative f }