diff options
author | Christoph Helma <helma@in-silico.ch> | 2015-08-25 17:20:55 +0200 |
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committer | Christoph Helma <helma@in-silico.ch> | 2015-08-25 17:20:55 +0200 |
commit | f8faf510b4574df1a00fa61a9f0a1681fc2f4857 (patch) | |
tree | acdbe6666ca5f528be368c6f9fdf4d7fb51d031e /lib/lazar.rb | |
parent | 8c6c59980bc82dc2177147f2fe34adf8bfbc1539 (diff) |
Experiments added
Diffstat (limited to 'lib/lazar.rb')
-rw-r--r-- | lib/lazar.rb | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/lib/lazar.rb b/lib/lazar.rb index d0128b7..5903556 100644 --- a/lib/lazar.rb +++ b/lib/lazar.rb @@ -16,7 +16,6 @@ ENV["MONGOID_ENV"] ||= "development" # TODO remove config files, change default via ENV or directly in Mongoid class Mongoid.load!("#{File.expand_path(File.join(File.dirname(__FILE__),'..','mongoid.yml'))}") $mongo = Mongoid.default_client -#$mongo = Mongo::Client.new('mongodb://127.0.0.1:27017/opentox') $gridfs = $mongo.database.fs # R setup @@ -26,8 +25,8 @@ R = Rserve::Connection.new STDOUT.sync = true # for redirection, etc see http://stackoverflow.com/questions/8549443/why-doesnt-logger-output-to-stdout-get-redirected-to-files $logger = Logger.new STDOUT # STDERR did not work on my development machine (CH) $logger.level = Logger::DEBUG -Mongo::Logger.logger = $logger Mongo::Logger.level = Logger::WARN +#Mongo::Logger.logger = $logger # Require sub-Repositories require_relative '../libfminer/libbbrc/bbrc' # include before openbabel @@ -43,7 +42,7 @@ ENV['FMINER_SILENT'] = 'true' ENV['FMINER_NR_HITS'] = 'true' # OpenTox classes and includes -CLASSES = ["Feature","Compound","Dataset","Validation","CrossValidation"]# Algorithm and Models are modules +CLASSES = ["Feature","Compound","Dataset","Validation","CrossValidation","Experiment"]# Algorithm and Models are modules [ # be aware of the require sequence as it affects class/method overwrites "overwrite.rb", @@ -64,5 +63,6 @@ CLASSES = ["Feature","Compound","Dataset","Validation","CrossValidation"]# Algor "regression.rb", "validation.rb", "crossvalidation.rb", + "experiment.rb", ].each{ |f| require_relative f } |