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| author | Christoph Helma <helma@in-silico.ch> | 2016-05-06 12:49:28 +0200 |
|---|---|---|
| committer | Christoph Helma <helma@in-silico.ch> | 2016-05-06 12:49:28 +0200 |
| commit | 51f57e2858b60bed74ebcc97189b2188c900c283 (patch) | |
| tree | a3be50b410e45fad3f33e956bb302c66e0370226 /lib/model.rb | |
| parent | ab7b37541b4f8a762be737009631d3eefd898b4a (diff) | |
dataset tests cleanup
Diffstat (limited to 'lib/model.rb')
| -rw-r--r-- | lib/model.rb | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/lib/model.rb b/lib/model.rb index 12abc6e..841ab20 100644 --- a/lib/model.rb +++ b/lib/model.rb @@ -47,9 +47,9 @@ module OpenTox end end R.assign "tox", toxicities - feature_ids = training_dataset.substances.collect{ |s| s["physchem"].keys}.flatten.uniq + feature_ids = training_dataset.substances.collect{ |s| s["physchem_descriptors"].keys}.flatten.uniq feature_ids.each do |feature_id| - feature_values = substances.collect{|s| s["physchem"][feature_id]} + feature_values = substances.collect{|s| s["physchem_descriptors"][feature_id]} R.assign "feature", feature_values begin #R.eval "cor <- cor.test(-log(tox),-log(feature),use='complete')" |