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author | Christoph Helma <helma@in-silico.ch> | 2015-09-10 12:54:18 +0200 |
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committer | Christoph Helma <helma@in-silico.ch> | 2015-09-10 12:54:18 +0200 |
commit | 96a476a2331daa4d1d6b5ac444bbdbd2ac221a5f (patch) | |
tree | 70d09c28efc104dee82058058b321e235421fe00 /lib/model.rb | |
parent | 5b844250a7d3be05e3139e0ca3c819c3da8ee4f6 (diff) |
tests fixed (crossvalidations may fail due to memory constraints)
Diffstat (limited to 'lib/model.rb')
-rw-r--r-- | lib/model.rb | 7 |
1 files changed, 5 insertions, 2 deletions
diff --git a/lib/model.rb b/lib/model.rb index 36011a0..547144f 100644 --- a/lib/model.rb +++ b/lib/model.rb @@ -138,16 +138,19 @@ module OpenTox end class LazarFminerClassification < LazarClassification - def self.create training_dataset + field :feature_calculation_parameters, type: Hash + + def self.create training_dataset, fminer_params={} model = super(training_dataset) model.update "_type" => self.to_s # adjust class model = self.find model.id # adjust class model.neighbor_algorithm = "OpenTox::Algorithm::Neighbor.fminer_similarity" model.neighbor_algorithm_parameters = { :feature_calculation_algorithm => "OpenTox::Algorithm::Descriptor.smarts_match", - :feature_dataset_id => Algorithm::Fminer.bbrc(training_dataset).id, + :feature_dataset_id => Algorithm::Fminer.bbrc(training_dataset,fminer_params).id, :min_sim => 0.3 } + model.feature_calculation_parameters = fminer_params model.save model end |