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authorgebele <gebele@in-silico.ch>2016-12-20 16:26:09 +0000
committergebele <gebele@in-silico.ch>2016-12-20 16:26:09 +0000
commit76912e72cf52c2a10423226ababb2b6d7f4b84ca (patch)
treee167ec15c9b9434c027a341db50a3e7ea4955c34 /lib/nanoparticle.rb
parentda086fad5b45c0d7b59feb40d0108ac620613933 (diff)
parenta5abdd27b8c9b3f1cf65a567bfd9eb17ecc91a72 (diff)
Merge branch 'development'1.0.0
Diffstat (limited to 'lib/nanoparticle.rb')
-rw-r--r--lib/nanoparticle.rb6
1 files changed, 6 insertions, 0 deletions
diff --git a/lib/nanoparticle.rb b/lib/nanoparticle.rb
index 02d9a89..06db4d2 100644
--- a/lib/nanoparticle.rb
+++ b/lib/nanoparticle.rb
@@ -40,6 +40,12 @@ module OpenTox
properties[feature.id.to_s] << value
properties[feature.id.to_s].uniq!
when "TOX"
+ if feature.name.match("Cell Viability Assay") and !feature.name.match("SLOPE") # -log10 transformation
+ value = -Math.log10(value)
+ feature.unit = "-log10(#{feature.unit})" unless feature.unit.match "log10"
+ feature.warnings += ["-log10 transformed values"] unless feature.warnings.include? "-log10 transformed values"
+ feature.save
+ end
dataset.add self, feature, value
else
warn "Unknown feature type '#{feature.category}'. Value '#{value}' not inserted."