toxbank-investigation compatible version

1 files changed, 0 insertions, 155 deletions

diff --git a/lib/overwrite.rb b/lib/overwrite.rb
deleted file mode 100644
index d541b61..0000000
--- a/lib/overwrite.rb
+++ /dev/null
@@ -1,155 +0,0 @@
-require 'uri'
-=begin
-# class overwrites aka monkey patches
-# hack: store sinatra instance in global var $url_provider to make url_for and halt methods accessible
-before {
-  raise "should not happen, url provider already differently initialized "+
-    $url_provider.request.host.to_s+" != "+self.request.host.to_s if
-    $url_provider and $url_provider.request.host!=self.request.host and 
-    $url_provider.request.script_name!=self.request.script_name
-  $url_provider = self
-  # stupid internet explorer does not ask for text/html, add this manually 
-  request.env['HTTP_ACCEPT'] += ";text/html" if request.env["HTTP_USER_AGENT"]=~/MSIE/
-  request.env['HTTP_ACCEPT']=request.params["media"] if request.params["media"]
-}
-
-# Error handling
-# Errors are logged as error and formated according to acccept-header
-# Non OpenTox::Errors (defined in error.rb) are handled as internal error (500), stacktrace is logged
-# IMPT: set sinatra settings :show_exceptions + :raise_errors to false in config.ru, otherwise Rack::Showexceptions takes over
-error Exception do
-  error = request.env['sinatra.error']
-  # log error message and backtrace to logfile
-  LOGGER.error error.class.to_s+": "+error.message
-  LOGGER.error ":\n"+error.backtrace.join("\n")
-  
-  actor = "#{request.env['rack.url_scheme']}://#{request.env['HTTP_HOST']}#{request.env['REQUEST_URI']}"
-  rep = OpenTox::ErrorReport.create(error, actor)
-
-  case request.env['HTTP_ACCEPT']
-  when /rdf/
-    content_type 'application/rdf+xml'
-    halt error.http_code,rep.to_rdfxml
-  when /html/
-    content_type 'text/html'
-    halt error.http_code,(OpenTox.text_to_html rep.to_yaml, @subjectid)
-  else
-    content_type 'application/x-yaml'
-    halt error.http_code,rep.to_yaml
-  end
-end
-
-class Sinatra::Base
-
-  def return_task( task )
-    raise "http_code == nil" unless task.http_code!=nil
-    case request.env['HTTP_ACCEPT']
-    when /rdf/
-      response['Content-Type'] = "application/rdf+xml"
-      halt task.http_code,task.to_rdfxml
-    when /yaml/
-      response['Content-Type'] = "application/x-yaml"
-      halt task.http_code,task.to_yaml # PENDING differs from task-webservice
-    when /html/
-      response['Content-Type'] = "text/html"
-      halt task.http_code,OpenTox.text_to_html(task.to_yaml, @subjectid)
-    else # default /uri-list/
-      response['Content-Type'] = "text/uri-list"
-      if task.completed?
-        halt task.http_code,task.resultURI+"\n"
-      else
-        halt task.http_code,task.uri+"\n"
-      end
-    end
-  end
-end
-=end
-
-class String
-  def task_uri?
-    self.uri? && !self.match(/task/).nil?
-  end
-  
-  def dataset_uri?
-   self.uri? && !self.match(/dataset/).nil?
-  end
- 
-  def self.model_uri?
-   self.uri? && !self.match(/model/).nil?
-  end
-
-  def uri?
-    begin
-      u = URI::parse(self)
-      return (u.scheme!=nil and u.host!=nil)
-    rescue URI::InvalidURIError
-      return false
-    end
-  end
-
-  def underscore
-    self.gsub(/::/, '/').
-    gsub(/([A-Z]+)([A-Z][a-z])/,'\1_\2').
-    gsub(/([a-z\d])([A-Z])/,'\1_\2').
-    tr("-", "_").
-    downcase
-  end
-end
-
-require 'logger'
-# logging
-#class Logger
-class OTLogger < Logger
-  
-  def pwd
-    path = Dir.pwd.to_s
-    index = path.rindex(/\//)
-    return path if index==nil
-    path[(index+1)..-1]
-  end
-  
-  def trace()
-    lines = caller(0)
-    n = 2
-    line = lines[n]
-    
-    while (line =~ /spork.rb/ or line =~ /create/ or line =~ /overwrite.rb/)
-      n += 1
-      line = lines[n]
-    end
-  
-    index = line.rindex(/\/.*\.rb/)
-    return line if index==nil
-    line[index..-1]
-  end
-  
-  def format(msg)
-    pwd.ljust(18)+" :: "+msg.to_s+"           :: "+trace
-  end
-  
-  def debug(msg)
-    super format(msg)
-  end
-  
-  def info(msg)
-    super format(msg)
-  end
-  
-  def warn(msg)
-    super format(msg)
-  end
-
-  def error(msg)
-    super format(msg)
-  end
-
-end
-
-# make migration from datamapper more straightforward
-=begin
-class Ohm::Model
-  def self.get(id)
-    self[id]
-  end
-end
-=end