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| author | Christoph Helma <helma@in-silico.ch> | 2015-09-23 14:51:41 +0200 |
|---|---|---|
| committer | Christoph Helma <helma@in-silico.ch> | 2015-09-23 14:51:41 +0200 |
| commit | d5bf97c2cb999539c56bf59aa1d7d3286745be84 (patch) | |
| tree | 91d5ab3fd9641c7349d45356d43aef867e4bee92 /lib/validation.rb | |
| parent | 259cd085e053193b4c166495ae1af35cfa94bcf6 (diff) | |
validations fixed (all models were executed with default parameters)
Diffstat (limited to 'lib/validation.rb')
| -rw-r--r-- | lib/validation.rb | 12 |
1 files changed, 11 insertions, 1 deletions
diff --git a/lib/validation.rb b/lib/validation.rb index 63fbd89..9eebef8 100644 --- a/lib/validation.rb +++ b/lib/validation.rb @@ -2,6 +2,7 @@ module OpenTox class Validation + field :model_id, type: BSON::ObjectId field :prediction_dataset_id, type: BSON::ObjectId field :crossvalidation_id, type: BSON::ObjectId field :test_dataset_id, type: BSON::ObjectId @@ -17,9 +18,17 @@ module OpenTox Dataset.find test_dataset_id end + def model + Model::Lazar.find model_id + end + def self.create model, training_set, test_set, crossvalidation=nil - validation_model = model.class.create training_set#, features + atts = model.attributes.dup # do not modify attributes from original model + atts["_id"] = BSON::ObjectId.new + atts[:training_dataset_id] = training_set.id + validation_model = model.class.create training_set, atts + validation_model.save test_set_without_activities = Dataset.new(:compound_ids => test_set.compound_ids) # just to be sure that activities cannot be used prediction_dataset = validation_model.predict test_set_without_activities predictions = [] @@ -36,6 +45,7 @@ module OpenTox end end validation = self.new( + :model_id => validation_model.id, :prediction_dataset_id => prediction_dataset.id, :test_dataset_id => test_set.id, :nr_instances => test_set.compound_ids.size, |