summaryrefslogtreecommitdiff
path: root/lib
diff options
context:
space:
mode:
authorChristoph Helma <helma@in-silico.ch>2010-09-08 14:03:32 +0200
committerChristoph Helma <helma@in-silico.ch>2010-09-08 14:03:32 +0200
commitda9582a7d176358cf4240972a423a011cbaac132 (patch)
treea5c4a3c2e7d80aa78770ff39423dae902f560c47 /lib
parent3c3b13f024a7d5e5b94c772be9ca4d9b99988743 (diff)
string concatination with << instead of +=, speeds things up for order of magnitudes
Diffstat (limited to 'lib')
-rw-r--r--lib/owl.rb25
1 files changed, 15 insertions, 10 deletions
diff --git a/lib/owl.rb b/lib/owl.rb
index 1a0d27c..c505f5c 100644
--- a/lib/owl.rb
+++ b/lib/owl.rb
@@ -1,3 +1,4 @@
+require 'open3'
# RDF namespaces
RDF = Redland::Namespace.new 'http://www.w3.org/1999/02/22-rdf-syntax-ns#'
OWL = Redland::Namespace.new 'http://www.w3.org/2002/07/owl#'
@@ -257,7 +258,11 @@ module OpenTox
def rdf
#@model.to_string
- @triples
+ #stdin, stdout, stderr = Open3.popen3('rapper -I test.org -i ntriples -o rdfxml -')
+ #stdin.puts @triples
+ #stdout
+ File.open("/tmp/d","w+") {|f| f.puts @triples}
+ `rapper -i ntriples -o rdfxml /tmp/d`
end
# returns the first object for subject:root_node and property
@@ -338,8 +343,8 @@ module OpenTox
# ot:Model,rdf:type,owl:Class
def set_type(ot_class, current_node=@root_node)
#@triples += "#{ot_class.to_s} #{RDF_TYPE.to_s} #{current_node.to_s}"
- @triples += "#{current_node} #{RDF_TYPE} #{node(ot_class).to_s}.\n".gsub(/\[/,'<').gsub(/\]/,'>')
- @triples += "#{node(ot_class).to_s} #{RDF_TYPE} #{OWL_TYPE_CLASS}.\n".gsub(/\[/,'<').gsub(/\]/,'>')
+ @triples << "#{current_node} #{RDF_TYPE} #{node(ot_class).to_s}.\n".gsub(/\[/,'<').gsub(/\]/,'>')
+ @triples << "#{node(ot_class).to_s} #{RDF_TYPE} #{OWL_TYPE_CLASS}.\n".gsub(/\[/,'<').gsub(/\]/,'>')
#@model.add current_node, RDF_TYPE, node(ot_class)
#@model.add node(ot_class), RDF_TYPE, OWL_TYPE_CLASS
end
@@ -350,8 +355,8 @@ module OpenTox
def set_literal(literal_name, literal_value, literal_datatype, current_node=@root_node)
#@triples += "#{current_node} #{node(literal_name)} #{Redland::Literal.create(literal_value, literal_datatype)}.\n".gsub(/\[/,'<').gsub(/\]/,'>')
#TODO: add datatype
- @triples += "#{current_node} #{node(literal_name)} \"#{literal_value}\".\n".gsub(/\[/,'<').gsub(/\]/,'>')
- @triples += "#{node(literal_name)} #{RDF_TYPE} #{OWL_TYPE_LITERAL}.\n".gsub(/\[/,'<').gsub(/\]/,'>')
+ @triples << "#{current_node} #{node(literal_name)} \"#{literal_value}\".\n".gsub(/\[/,'<').gsub(/\]/,'>')
+ @triples << "#{node(literal_name)} #{RDF_TYPE} #{OWL_TYPE_LITERAL}.\n".gsub(/\[/,'<').gsub(/\]/,'>')
#@model.add current_node, node(literal_name), Redland::Literal.create(literal_value, literal_datatype)
#@model.add node(literal_name), RDF_TYPE, OWL_TYPE_LITERAL
end
@@ -362,11 +367,11 @@ module OpenTox
# algorihtm_xy,rdf:type,ot:Algorithm
# ot:Algorithm,rdf:type,owl:Class
def set_object_property(property, object, object_class, current_node=@root_node)
-# object_node = Redland::Resource.new(object)
-# @triples += "#{current_node} #{node(property)} #{object_node}.\n".gsub(/\[/,'<').gsub(/\]/,'>')
-# @triples += "#{node(property)} #{RDF_TYPE} #{OWL_TYPE_OBJECT_PROPERTY}.\n".gsub(/\[/,'<').gsub(/\]/,'>')
-# @triples += "#{object_node} #{RDF_TYPE} #{node(object_class)}.\n".gsub(/\[/,'<').gsub(/\]/,'>')
-# @triples += "#{node(object_class)} #{RDF_TYPE} #{OWL_TYPE_CLASS}.\n".gsub(/\[/,'<').gsub(/\]/,'>')
+ object_node = Redland::Resource.new(object)
+ @triples << "#{current_node} #{node(property)} #{object_node}.\n".gsub(/\[/,'<').gsub(/\]/,'>')
+ @triples << "#{node(property)} #{RDF_TYPE} #{OWL_TYPE_OBJECT_PROPERTY}.\n".gsub(/\[/,'<').gsub(/\]/,'>')
+ @triples << "#{object_node} #{RDF_TYPE} #{node(object_class)}.\n".gsub(/\[/,'<').gsub(/\]/,'>')
+ @triples << "#{node(object_class)} #{RDF_TYPE} #{OWL_TYPE_CLASS}.\n".gsub(/\[/,'<').gsub(/\]/,'>')
#@model.add current_node, node(property), object_node
#@model.add node(property), RDF_TYPE, OWL_TYPE_OBJECT_PROPERTY
#@model.add object_node, RDF_TYPE, node(object_class)