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| author | Christoph Helma <helma@in-silico.ch> | 2019-08-19 15:28:44 +0200 |
|---|---|---|
| committer | Christoph Helma <helma@in-silico.ch> | 2019-08-19 15:28:44 +0200 |
| commit | 15f093eee66597b0b4a4defa7d8645a3e13372a0 (patch) | |
| tree | 19da2771f88bbb3c77d2c6905a0c4b1694bf5620 /lib | |
| parent | a43af9e1d26d564fdbcf089977908a19299acd5a (diff) | |
| parent | 488ce9fe6d4b715680675861105b8c52a7535140 (diff) | |
Merge branch 'development' of ssh://git.in-silico.ch:2222/home/ist/public/lazar into developmentdevelopment
Diffstat (limited to 'lib')
| -rw-r--r-- | lib/validation-statistics.rb | 14 |
1 files changed, 9 insertions, 5 deletions
diff --git a/lib/validation-statistics.rb b/lib/validation-statistics.rb index d603294..5fd9985 100644 --- a/lib/validation-statistics.rb +++ b/lib/validation-statistics.rb @@ -101,7 +101,7 @@ module OpenTox R.assign "probability", probabilities R.eval "image = qplot(probability,accuracy)+ylab('Accumulated accuracy')+xlab('Prediction probability')+ylim(c(0,1))+scale_x_reverse()+geom_line()" R.eval "ggsave(file='#{tmpfile}', plot=image)" - file = Mongo::Grid::File.new(File.read(tmpfile), :filename => "#{self.id.to_s}_probability_plot.svg") + file = Mongo::Grid::File.new(File.read(tmpfile), :filename => "#{self.id.to_s}_probability_plot.#{format}") plot_id = $gridfs.insert_one(file) update(:probability_plot_id => plot_id) #end @@ -129,7 +129,7 @@ module OpenTox predictions.each do |cid,pred| !if pred[:value] and pred[:measurements] and !pred[:measurements].empty? insert_prediction pred, :all - if pred[:confidence].match(/High/i) + if pred[:confidence].match(/Similar/i) insert_prediction pred, :confidence_high elsif pred[:confidence].match(/Low/i) insert_prediction pred, :confidence_low @@ -178,8 +178,12 @@ module OpenTox # @param [String,nil] format # @return [Blob] def correlation_plot format: "png" - unless correlation_plot_id - tmpfile = "/tmp/#{id.to_s}_correlation.#{format}" + #unless correlation_plot_id + #tmpfile = "/tmp/#{id.to_s}_correlation.#{format}" + tmpdir = "/tmp" + #p tmpdir + FileUtils.mkdir_p tmpdir + tmpfile = File.join(tmpdir,"#{id.to_s}_correlation.#{format}") x = [] y = [] feature = Feature.find(predictions.first.last["prediction_feature_id"]) @@ -203,7 +207,7 @@ module OpenTox file = Mongo::Grid::File.new(File.read(tmpfile), :filename => "#{id.to_s}_correlation_plot.#{format}") plot_id = $gridfs.insert_one(file) update(:correlation_plot_id => plot_id) - end + #end $gridfs.find_one(_id: correlation_plot_id).data end |