diff options
author | gebele <gebele@in-silico.ch> | 2017-03-31 15:07:28 +0000 |
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committer | gebele <gebele@in-silico.ch> | 2017-03-31 15:07:28 +0000 |
commit | db38c345fdc119edd8a892a5b0ba2c2a4b1cbe1f (patch) | |
tree | d03f73e581dceecf6b044e6055876dbf903486ed /lib | |
parent | eef5d89a92dd7dde9acf9fc063a54e1fe729a89b (diff) |
set default min sim to 0.1 for classification and 0.5 for regression
Diffstat (limited to 'lib')
-rw-r--r-- | lib/model.rb | 12 |
1 files changed, 8 insertions, 4 deletions
diff --git a/lib/model.rb b/lib/model.rb index 7cc6765..80affd5 100644 --- a/lib/model.rb +++ b/lib/model.rb @@ -68,10 +68,6 @@ module OpenTox :method => "fingerprint", :type => "MP2D", }, - :similarity => { - :method => "Algorithm::Similarity.tanimoto", - :min => 0.5, - }, :feature_selection => nil } @@ -79,10 +75,18 @@ module OpenTox model.algorithms[:prediction] = { :method => "Algorithm::Classification.weighted_majority_vote", } + model.algorithms[:similarity] = { + :method => "Algorithm::Similarity.tanimoto", + :min => 0.1, + } elsif model.class == LazarRegression model.algorithms[:prediction] = { :method => "Algorithm::Caret.rf", } + model.algorithms[:similarity] = { + :method => "Algorithm::Similarity.tanimoto", + :min => 0.5, + } end elsif substance_classes.first == "OpenTox::Nanoparticle" |