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| author | Christoph Helma <helma@in-silico.ch> | 2021-02-12 19:54:07 +0100 |
|---|---|---|
| committer | Christoph Helma <helma@in-silico.ch> | 2021-02-12 19:54:07 +0100 |
| commit | a29eb3e38414cd252850c9c4fb356f8b2bef6fb4 (patch) | |
| tree | a957d9ac455e7345c51f3ab6075698f552c497d1 /models/mutagenicity-padel/Makefile | |
| parent | 158e9a7ecbc467c3db77c354f203b1176b0fc3f2 (diff) | |
model.rb refactored, mp2d models updated
Diffstat (limited to 'models/mutagenicity-padel/Makefile')
| -rw-r--r-- | models/mutagenicity-padel/Makefile | 36 |
1 files changed, 0 insertions, 36 deletions
diff --git a/models/mutagenicity-padel/Makefile b/models/mutagenicity-padel/Makefile deleted file mode 100644 index ca484b8..0000000 --- a/models/mutagenicity-padel/Makefile +++ /dev/null @@ -1,36 +0,0 @@ -LAZAR_BIN = ../../bin -PARAMETERS = independent_variable_type dependent_variable_type dependent_variable_values similarity_thresholds - -all: crossvalidation/summaries metadata.json - -# Crossvalidation - -crossvalidation/summaries: crossvalidation - $(LAZAR_BIN)/classification_summary.rb crossvalidation - -crossvalidation: independent_variables - $(LAZAR_BIN)/classification_crossvalidation.rb . - -# Model - -independent_variables: GenoTox-database.csv $(METADATA) - $(LAZAR_BIN)/scale_independent_variables.rb $< - -# Metadata - -metadata.json: - echo '{"species":"Salmonella typhimurium","endpoint":"Mutagenicity","source":"http://cheminformatics.org/datasets/bursi/cas_4337.zip, http://doc.ml.tu-berlin.de/toxbenchmark/Mutagenicity_N6512.csv, https://data.europa.eu/euodp/data/storage/f/2017-07-19T142131/GENOTOX data and dictionary.xls","qmrf":{"group":"QMRF 4.10. Mutagenicity","name":"OECD 471 Bacterial Reverse Mutation Test"}}' > $@ - -# Model parameters - -independent_variable_type: - echo "numeric" > $@ - -dependent_variable_type: - echo "binary" > $@ - -dependent_variable_values: - echo -e "\"0\"\n\"1\"" > $@ - -similarity_thresholds: - echo -e "0.2\n0.5" > $@ |