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authorChristoph Helma <helma@in-silico.ch>2012-04-26 16:04:05 +0200
committerChristoph Helma <helma@in-silico.ch>2012-04-26 16:04:05 +0200
commitf8b6f8d19566d372e47edba7968ce66ff09052c9 (patch)
tree507b4ffe74bf63bbe8664aac2b3c57efae8717ab /test/dataset.rb
parentb01dce14f765875d7c75edb545323b444fa2b140 (diff)
tests removed, URI.accessible? check temporarily removed
Diffstat (limited to 'test/dataset.rb')
-rw-r--r--test/dataset.rb99
1 files changed, 0 insertions, 99 deletions
diff --git a/test/dataset.rb b/test/dataset.rb
deleted file mode 100644
index b3190b8..0000000
--- a/test/dataset.rb
+++ /dev/null
@@ -1,99 +0,0 @@
-require 'test/unit'
-$LOAD_PATH << File.join(File.dirname(__FILE__),'..','lib')
-require File.join File.dirname(__FILE__),'..','lib','opentox-client.rb'
-DATASET = "http://ot-dev.in-silico.ch/dataset"
-AA ||= "https://opensso.in-silico.ch"
-AA_USER = "guest"
-AA_PASS = "guest"
-@@subjectid = OpenTox::Authorization.authenticate(AA_USER,AA_PASS)
-
-DATA_DIR = File.join(File.dirname(__FILE__),"data")
-# TODO: add subjectids
-
-
-class DatasetTest < Test::Unit::TestCase
-
- def test_all
- puts @@subjectid
- datasets = OpenTox::Dataset.all(DATASET, @@subjectid)
- assert_equal OpenTox::Dataset, datasets.first.class
- end
-
- def test_create_empty
- d = OpenTox::Dataset.create(DATASET, @@subjectid)
- assert_equal OpenTox::Dataset, d.class
- assert_match /#{DATASET}/, d.uri.to_s
- d.delete
- end
-
- def test_create_from_file
- d = OpenTox::Dataset.from_file DATASET, File.join(DATA_DIR,"EPAFHM.mini.csv"), @@subjectid
- assert_equal OpenTox::Dataset, d.class
- assert_equal d.uri, d[RDF::XSD.anyURI]
- assert_equal "EPAFHM.mini", d.metadata[RDF::URI("http://purl.org/dc/elements/1.1/title")].first.to_s # DC.title is http://purl.org/dc/terms/title
- assert_equal "EPAFHM.mini", d[RDF::URI("http://purl.org/dc/elements/1.1/title")]
- d.delete
- assert_raise OpenTox::NotFoundError do
- d.get
- end
- end
-
- def test_from_yaml
- @dataset = OpenTox::Dataset.from_file DATASET, File.join(DATA_DIR,"hamster_carcinogenicity.yaml"), @@subjectid
- assert_equal OpenTox::Dataset, @dataset.class
- assert_equal "hamster_carcinogenicity", @dataset[RDF::URI("http://purl.org/dc/elements/1.1/title")]
- hamster_carc?
- @dataset.delete
- end
-
-=begin
-# TODO: fix (mime type??0 and add Egons example
- def test_sdf_with_multiple_features
- @dataset = OpenTox::Dataset.from_file DATASET, "#{DATA_DIR}/CPDBAS_v5c_1547_29Apr2008part.sdf"
- assert_equal OpenTox::Dataset, @dataset.class
- puts @dataset.features.size
- puts @dataset.compounds.size
- @dataset.delete
- end
-=end
-
- def test_multicolumn_csv
- @dataset = OpenTox::Dataset.from_file DATASET, "#{DATA_DIR}/multicolumn.csv", @@subjectid
- assert_equal 5, @dataset.features.size
- assert_equal 4, @dataset.compounds.size
- @dataset.delete
- end
-
- def test_from_csv
- @dataset = OpenTox::Dataset.from_file DATASET, "#{DATA_DIR}/hamster_carcinogenicity.csv", @@subjectid
- assert_equal OpenTox::Dataset, @dataset.class
- hamster_carc?
- @dataset.delete
- end
-
-=begin
- def test_save
- d = OpenTox::Dataset.create DATASET
- d.metadata
- d.metadata[RDF::DC.title] = "test"
- d.save
- # TODO: save does not work with datasets
- #puts d.response.code.inspect
- #assert_equal "test", d.metadata[RDF::DC.title] # should reload metadata
- d.delete
- end
-=end
-=begin
-=end
-
-
- def hamster_carc?
- assert_kind_of OpenTox::Dataset, @dataset
- #require 'yaml'
- #puts @dataset.data_entries.to_yaml
- assert_equal 85, @dataset.data_entries.size
- assert_equal 85, @dataset.compounds.size
- assert_equal 1, @dataset.features.size
- assert_equal @dataset.uri, @dataset[RDF::XSD.anyURI]
- end
-end