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author | Christoph Helma <helma@in-silico.ch> | 2015-10-08 10:43:43 +0200 |
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committer | Christoph Helma <helma@in-silico.ch> | 2015-10-08 10:43:43 +0200 |
commit | 1a56148aadef031c4f487bc23fda43f4ac5b7369 (patch) | |
tree | 3555c5883ed0c292b105c40c185ebba3e5bd4e3e /test/fminer-long.rb | |
parent | 394d564699756288569169ff3e198d6d7702f092 (diff) | |
parent | e3217075b602a950a0ee995fcfa731d97b5ba3eb (diff) |
new master branch
Diffstat (limited to 'test/fminer-long.rb')
-rw-r--r-- | test/fminer-long.rb | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/test/fminer-long.rb b/test/fminer-long.rb new file mode 100644 index 0000000..0f202b4 --- /dev/null +++ b/test/fminer-long.rb @@ -0,0 +1,38 @@ +require_relative "setup.rb" + +class FminerTest < MiniTest::Test + + def test_fminer_multicell + #skip "multicell segfaults" + # TODO aborts, probably fminer + # or OpenBabel segfault + dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"multi_cell_call.csv") + feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset)#, :min_frequency => 15) + p feature_dataset.training_parameters + assert_equal dataset.compound_ids, feature_dataset.compound_ids + dataset.delete + feature_dataset.delete + end + + def test_fminer_isscan + dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"ISSCAN-multi.csv") + feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset)#, :min_frequency => 15) + assert_equal feature_dataset.compounds.size, dataset.compounds.size + p feature_dataset.features.size + p feature_dataset.training_parameters + dataset.delete + feature_dataset.delete + end + + def test_fminer_kazius + dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"kazius.csv") + # TODO reactivate default settings + feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset, :min_frequency => 20) + assert_equal feature_dataset.compounds.size, dataset.compounds.size + feature_dataset = Dataset.find feature_dataset.id + assert feature_dataset.data_entries.size, dataset.compounds.size + dataset.delete + feature_dataset.delete + end + +end |