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author | Christoph Helma <helma@in-silico.ch> | 2015-08-10 13:26:06 +0200 |
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committer | Christoph Helma <helma@in-silico.ch> | 2015-08-10 13:26:06 +0200 |
commit | b7cd3ebbb858a8891c35c45896f1bdd525f3534e (patch) | |
tree | a9df6b1f4fc15f2f953e9a23c6dd00b74a967754 /test/fminer-long.rb | |
parent | 23ecfc6fa5ae4913e5cd17b7d58432d1f88d780c (diff) |
algorithm libraries added, fminer tests pass
Diffstat (limited to 'test/fminer-long.rb')
-rw-r--r-- | test/fminer-long.rb | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/test/fminer-long.rb b/test/fminer-long.rb new file mode 100644 index 0000000..826f206 --- /dev/null +++ b/test/fminer-long.rb @@ -0,0 +1,37 @@ +require_relative "setup.rb" + +class FminerTest < MiniTest::Test + + def test_fminer_multicell + skip "multicell segfaults" + # TODO aborts, probably fminer + # or OpenBabel segfault + dataset = OpenTox::Dataset.new + #multi_cell_call.csv + dataset.upload File.join(DATA_DIR,"multi_cell_call.csv") + feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset)#, :min_frequency => 15) + dataset.delete + feature_dataset.delete + end + + def test_fminer_isscan + dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"ISSCAN-multi.csv") + feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset)#, :min_frequency => 15) + assert_equal feature_dataset.compounds.size, dataset.compounds.size + p feature_dataset + dataset.delete + feature_dataset.delete + end + + def test_fminer_kazius + dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"kazius.csv") + # TODO reactivate default settings + feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset, :min_frequency => 20) + assert_equal feature_dataset.compounds.size, dataset.compounds.size + feature_dataset = Dataset.find feature_dataset.id + assert feature_dataset.data_entries.size, dataset.compounds.size + dataset.delete + feature_dataset.delete + end + +end |