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| author | helma@in-silico.ch <helma@in-silico.ch> | 2018-10-30 17:26:59 +0100 |
|---|---|---|
| committer | helma@in-silico.ch <helma@in-silico.ch> | 2018-10-30 17:26:59 +0100 |
| commit | d61f78093f4ddf03c27a2c8ae0bab9c1f10c80f5 (patch) | |
| tree | 5e04969abc61ba1cc0f889ea3a4b2496878741c1 /test/use_cases.rb | |
| parent | d7d57cb83dbc78b2aade173bde5fa893ebf634fe (diff) | |
tests fixed
Diffstat (limited to 'test/use_cases.rb')
| -rw-r--r-- | test/use_cases.rb | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/test/use_cases.rb b/test/use_cases.rb index d9ae78b..15e65a3 100644 --- a/test/use_cases.rb +++ b/test/use_cases.rb @@ -3,10 +3,12 @@ require_relative "setup.rb" class UseCasesTest < MiniTest::Test def test_PA + skip kazius = Dataset.from_sdf_file "#{DATA_DIR}/cas_4337.sdf" hansen = Dataset.from_csv_file "#{DATA_DIR}/hansen.csv" efsa = Dataset.from_csv_file "#{DATA_DIR}/efsa.csv" datasets = [kazius,hansen,efsa] + map = {"true" => "carcinogen", "false" => "non-carcinogen"} training_dataset = Dataset.merge datasets: datasets, features: datasets.collect{|d| d.bioactivity_features.first}, value_maps: [nil,map,map], keep_original_features: false, remove_duplicates: true model = Model::Validation.create training_dataset: training_dataset, species: "Salmonella typhimurium", endpoint: "Mutagenicity" pa = Dataset.from_sdf_file "#{DATA_DIR}/PA.sdf" |