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Diffstat (limited to 'bin/opentox-install-debian.sh')
| -rw-r--r-- | bin/opentox-install-debian.sh | 105 |
1 files changed, 0 insertions, 105 deletions
diff --git a/bin/opentox-install-debian.sh b/bin/opentox-install-debian.sh deleted file mode 100644 index cf173da..0000000 --- a/bin/opentox-install-debian.sh +++ /dev/null @@ -1,105 +0,0 @@ -#!/bin/bash -#Installation is tested on Debian Lenny Ubuntu 9.04 -#Update the system - -ERRLOG='install_err.log' -INSTALLLOG='install_log.log' -DATE=$(date +%Y/%m/%d\ %H:%M:%S) - -echo "=================================================" -echo "Please enshure that the sudo package is installed" -echo "on your system. " -echo "On Ubuntu Linux sudo is installed by default." -echo "If you are unshure check with it 'sudo ls'" -echo "and installed it with 'apt-get install sudo'" -echo "and add your username with visudo." -echo "=================================================" -echo -n "To continue installation press y: " -read answer -if [ "$answer" != "y" ] -then - echo "exiting the script..." - exit 1 -fi - -echo "opentox webservice install log - " $DATE > $INSTALLLOG -echo "Installing: build-essential" -sudo apt-get install build-essential >> $INSTALLLOG 2>>$ERRLOG -echo "Installing: ruby 1.8 with its dev files" -sudo apt-get install ruby ruby1.8-dev >> $INSTALLLOG 2>>$ERRLOG -echo "Installing: gems rdoc rubygems and rake" -sudo apt-get install gems rdoc rubygems rake >> $INSTALLLOG 2>>$ERRLOG - -echo "Installing rubygems from source. This may take some time" -wget http://rubyforge.org/frs/download.php/60718/rubygems-1.3.5.tgz >> $INSTALLLOG 2>>$ERRLOG -tar xzfv rubygems-1.3.5.tgz 2>>$ERRLOG -cd rubygems-1.3.5 >> $INSTALLLOG 2>>$ERRLOG -sudo ruby setup.rb 2>>$ERRLOG -cd .. - -echo "Adding http://gems.github.com to ruby gem sources" -sudo gem sources -a http://gems.github.com >> $INSTALLLOG 2>>$ERRLOG - -#for debian lenny: -echo "Installing packages: zlib1g-dev tcl curl perl ssh tcl tk8.5" -sudo apt-get install zlib1g-dev tcl curl perl ssh tcl tk8.5 >> $INSTALLLOG 2>>$ERRLOG -echo "Installing git from source" -wget http://www.kernel.org/pub/software/scm/git/git-1.6.5.2.tar.gz >> $INSTALLLOG 2>>$ERRLOG -tar xzfv git-1.6.5.2.tar.gz 2>>$ERRLOG -cd git-1.6.5.2 >> $INSTALLLOG 2>>$ERRLOG -./configure 2>>$ERRLOG -make 2>>$ERRLOG -make install 2>>$ERRLOG - -echo "Installing the opentox webservices" -mkdir webservices >> $INSTALLLOG 2>>$ERRLOG -cd webservices >> $INSTALLLOG 2>>$ERRLOG - -git clone git://github.com/helma/opentox-compound.git >> $INSTALLLOG 2>>$ERRLOG -git clone git://github.com/helma/opentox-feature.git >> $INSTALLLOG 2>>$ERRLOG -git clone git://github.com/helma/opentox-dataset.git >> $INSTALLLOG 2>>$ERRLOG -git clone git://github.com/helma/opentox-algorithm.git >> $INSTALLLOG 2>>$ERRLOG -git clone git://github.com/helma/opentox-model.git >> $INSTALLLOG 2>>$ERRLOG -git clone git://github.com/helma/opentox-test.git >> $INSTALLLOG 2>>$ERRLOG - -cd opentox-compound >> $INSTALLLOG 2>>$ERRLOG -git checkout -b development origin/development >> $INSTALLLOG 2>>$ERRLOG -cd ../opentox-feature >> $INSTALLLOG 2>>$ERRLOG -git checkout -b development origin/development >> $INSTALLLOG 2>>$ERRLOG -cd ../opentox-dataset >> $INSTALLLOG 2>>$ERRLOG -git checkout -b development origin/development >> $INSTALLLOG 2>>$ERRLOG -cd ../opentox-algorithm >> $INSTALLLOG 2>>$ERRLOG -git checkout -b development origin/development >> $INSTALLLOG 2>>$ERRLOG -cd ../opentox-model >> $INSTALLLOG 2>>$ERRLOG -git checkout -b development origin/development >> $INSTALLLOG 2>>$ERRLOG -cd .. >> $INSTALLLOG 2>>$ERRLOG -git clone git://github.com/helma/opentox-ruby-api-wrapper.git >> $INSTALLLOG 2>>$ERRLOG -cd opentox-ruby-api-wrapper >> $INSTALLLOG 2>>$ERRLOG -git checkout -b development origin/development >> $INSTALLLOG 2>>$ERRLOG -rake install >> $INSTALLLOG 2>>$ERRLOG - - -cd ../opentox-compound >> $INSTALLLOG 2>>$ERRLOG -echo "Installing libopenssl-ruby" -sudo apt-get install libopenssl-ruby >> $INSTALLLOG 2>>$ERRLOG -echo "Installing dtach" -rake dtach:install >> $INSTALLLOG 2>>$ERRLOG -echo "Installing openbabel" -rake openbabel:install >> $INSTALLLOG 2>>$ERRLOG - -#debian lenny missed liblink: -ln -s /usr/local/lib/libopenbabel.so.3 /usr/lib/libopenbabel.so.3 >> $INSTALLLOG 2>>$ERRLOG - -rake redis:download >> $INSTALLLOG 2>>$ERRLOG -rake redis:install >> $INSTALLLOG 2>>$ERRLOG -#edit /home/[username]/.opentox/config/test.yaml set :base_dir: /home/[username]/webservices -sudo apt-get install libgsl0-dev >> $INSTALLLOG 2>>$ERRLOG -sudo apt-get install swig >> $INSTALLLOG 2>>$ERRLOG -sudo apt-get install curl >> $INSTALLLOG 2>>$ERRLOG -cd ../opentox-algorithm >> $INSTALLLOG 2>>$ERRLOG -echo "Installing fminer" -rake fminer:install >> $INSTALLLOG 2>>$ERRLOG -sudo apt-get install libsqlite3-dev >> $INSTALLLOG 2>>$ERRLOG - - -mkdir ../opentox-model/db >> $INSTALLLOG 2>>$ERRLOG |