diff options
Diffstat (limited to 'data/enm-import.rb')
-rw-r--r-- | data/enm-import.rb | 50 |
1 files changed, 50 insertions, 0 deletions
diff --git a/data/enm-import.rb b/data/enm-import.rb new file mode 100644 index 0000000..65fd3c7 --- /dev/null +++ b/data/enm-import.rb @@ -0,0 +1,50 @@ +require_relative '../lib/lazar.rb' +include OpenTox + + +#get list of bundle URIs +bundles = JSON.parse(RestClientWrapper.get('https://data.enanomapper.net/bundle?media=application%2Fjson'))["dataset"] +bundles.each do |bundle| + uri = bundle["URI"] + nanoparticles = JSON.parse(RestClientWrapper.get(bundle["dataset"]+"?media=application%2Fjson"))["dataEntry"] + features = JSON.parse(RestClientWrapper.get(bundle["property"]+"?media=application%2Fjson"))["feature"] + nanoparticles.each do |np| + nanoparticle = Nanoparticle.find_or_create_by( + :name => np["values"]["https://data.enanomapper.net/identifier/name"], + :source => np["compound"]["URI"], + ) + np["composition"].each do |comp| + case comp["relation"] + when "HAS_CORE" + nanoparticle[:core] = comp["component"]["compound"]["URI"] + when "HAS_COATING" + nanoparticle[:coating] ||= [] + nanoparticle[:coating] << comp["component"]["compound"]["URI"] + end + end if np["composition"] + np["values"].each do |u,v| + if u.match(/property/) + name, unit = nil + features.each do |uri,feat| + if u.match(/#{uri}/) + name = feat["title"] + unit = feat["units"] + end + end + feature = Feature.find_or_create_by( + :name => name, + :unit => unit, + #:source => uri + ) + nanoparticle[:features] ||= {} + if v.size == 1 and v.first.keys == ["loValue"] + nanoparticle[:features][feature.id] = v.first["loValue"] + else + #TODO + end + end + end + p nanoparticle + nanoparticle.save + end +end |