diff options
Diffstat (limited to 'lib/algorithm.rb')
| -rw-r--r-- | lib/algorithm.rb | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/lib/algorithm.rb b/lib/algorithm.rb index e089184..91e075a 100644 --- a/lib/algorithm.rb +++ b/lib/algorithm.rb @@ -227,6 +227,7 @@ module OpenTox # @param [Array] props, propositionalization of neighbors and query structure e.g. [ Array_for_q, two-nested-Arrays_for_n ] # @return [Numeric] A prediction value. def self.local_svm(neighbors, acts, sims, type, params) + LOGGER.debug "Local SVM (Weighted Tanimoto Kernel)." neighbor_matches = neighbors.collect{ |n| n[:features] } # URIs of matches gram_matrix = [] # square matrix of similarities between neighbors; implements weighted tanimoto kernel if neighbor_matches.size == 0 @@ -299,6 +300,7 @@ module OpenTox # @return [Numeric] A prediction value. def self.local_svm_prop(props, acts, type, params) + LOGGER.debug "Local SVM (Propositionalization / Kernlab Kernel)." n_prop = props[0] # is a matrix, i.e. two nested Arrays. q_prop = props[1] # is an Array. |