diff options
Diffstat (limited to 'lib/compound.rb')
-rw-r--r-- | lib/compound.rb | 11 |
1 files changed, 6 insertions, 5 deletions
diff --git a/lib/compound.rb b/lib/compound.rb index 45b96b8..9366db4 100644 --- a/lib/compound.rb +++ b/lib/compound.rb @@ -11,19 +11,19 @@ module OpenTox def initialize(params) if params[:smiles] @inchi = smiles2inchi(params[:smiles]) - @uri = File.join(CONFIG[:services]["opentox-compound"],URI.escape(@inchi)) + @uri = File.join(@@config[:services]["opentox-compound"],URI.escape(@inchi)) elsif params[:inchi] @inchi = params[:inchi] - @uri = File.join(CONFIG[:services]["opentox-compound"],URI.escape(@inchi)) + @uri = File.join(@@config[:services]["opentox-compound"],URI.escape(@inchi)) elsif params[:sdf] @inchi = sdf2inchi(params[:sdf]) - @uri = File.join(CONFIG[:services]["opentox-compound"],URI.escape(@inchi)) + @uri = File.join(@@config[:services]["opentox-compound"],URI.escape(@inchi)) elsif params[:name] # paranoid URI encoding to keep SMILES charges and brackets @inchi = RestClient.get("#{@@cactus_uri}#{URI.encode(params[:name], Regexp.new("[^#{URI::PATTERN::UNRESERVED}]"))}/stdinchi").body.chomp # this was too hard for me to debug and leads to additional errors (ch) #@inchi = RestClientWrapper.get("#{@@cactus_uri}#{URI.encode(params[:name], Regexp.new("[^#{URI::PATTERN::UNRESERVED}]"))}/stdinchi").chomp - @uri = File.join(CONFIG[:services]["opentox-compound"],URI.escape(@inchi)) + @uri = File.join(@@config[:services]["opentox-compound"],URI.escape(@inchi)) elsif params[:uri] @uri = params[:uri] case params[:uri] @@ -56,7 +56,8 @@ module OpenTox end def image_uri - "#{@@ambit_uri}#{smiles}" + File.join @uri, "image" + #"#{@@ambit_uri}#{smiles}" #"#{@@cactus_uri}#{@inchi}/image" end |