diff options
Diffstat (limited to 'lib/lazar.rb')
| -rw-r--r-- | lib/lazar.rb | 18 |
1 files changed, 6 insertions, 12 deletions
diff --git a/lib/lazar.rb b/lib/lazar.rb index b4293e9..22dfd2b 100644 --- a/lib/lazar.rb +++ b/lib/lazar.rb @@ -40,17 +40,18 @@ when "development" end # R setup +rlib = File.expand_path(File.join(File.dirname(__FILE__),"..","R")) # should work on POSIX including os x # http://stackoverflow.com/questions/19619582/number-of-processors-cores-in-command-line NR_CORES = `getconf _NPROCESSORS_ONLN`.to_i R = Rserve::Connection.new R.eval " suppressPackageStartupMessages({ - library(ggplot2) - library(grid) - library(gridExtra) - library(caret) - library(doMC) + library(ggplot2,lib=\"#{rlib}\") + library(grid,lib=\"#{rlib}\") + library(gridExtra,lib=\"#{rlib}\") + library(caret,lib=\"#{rlib}\") + library(doMC,lib=\"#{rlib}\") registerDoMC(#{NR_CORES}) }) " @@ -58,13 +59,6 @@ suppressPackageStartupMessages({ # Require sub-Repositories require_relative '../openbabel/lib/openbabel' -# Fminer environment variables -ENV['FMINER_SMARTS'] = 'true' -ENV['FMINER_NO_AROMATIC'] = 'true' -ENV['FMINER_PVALUES'] = 'true' -ENV['FMINER_SILENT'] = 'true' -ENV['FMINER_NR_HITS'] = 'true' - # OpenTox classes and includes CLASSES = ["Feature","Compound","Dataset","Validation","CrossValidation","LeaveOneOutValidation","RepeatedCrossValidation","Experiment"]# Algorithm and Models are modules |