diff options
Diffstat (limited to 'lib/lazar.rb')
| -rw-r--r-- | lib/lazar.rb | 7 |
1 files changed, 4 insertions, 3 deletions
diff --git a/lib/lazar.rb b/lib/lazar.rb index decbe69..89b50f7 100644 --- a/lib/lazar.rb +++ b/lib/lazar.rb @@ -15,7 +15,8 @@ ENV["MONGOID_ENV"] ||= "development" # TODO remove config files, change default via ENV or directly in Mongoid class Mongoid.load!("#{File.expand_path(File.join(File.dirname(__FILE__),'..','mongoid.yml'))}") Mongoid.raise_not_found_error = false # return nil if no document is found -$mongo = Mongoid.default_client +$mongo = Mongo::Client.new('mongodb://127.0.0.1:27017/opentox') +#$mongo = Mongoid.default_client $gridfs = $mongo.database.fs # R setup @@ -42,7 +43,7 @@ ENV['FMINER_SILENT'] = 'true' ENV['FMINER_NR_HITS'] = 'true' # OpenTox classes and includes -CLASSES = ["Feature","Compound","Dataset","Validation","CrossValidation","Experiment"]# Algorithm and Models are modules +CLASSES = ["Feature","Compound","Dataset","Validation","CrossValidation","RepeatedCrossValidation","Experiment"]# Algorithm and Models are modules [ # be aware of the require sequence as it affects class/method overwrites "overwrite.rb", @@ -58,7 +59,7 @@ CLASSES = ["Feature","Compound","Dataset","Validation","CrossValidation","Experi "bbrc.rb", "model.rb", "similarity.rb", - "neighbor.rb", + #"neighbor.rb", "classification.rb", "regression.rb", "validation.rb", |