diff options
Diffstat (limited to 'lib/lazar.rb')
| -rw-r--r-- | lib/lazar.rb | 18 |
1 files changed, 14 insertions, 4 deletions
diff --git a/lib/lazar.rb b/lib/lazar.rb index a28ba3a..f251379 100644 --- a/lib/lazar.rb +++ b/lib/lazar.rb @@ -48,6 +48,7 @@ NR_CORES = `getconf _NPROCESSORS_ONLN`.to_i R = Rserve::Connection.new R.eval " suppressPackageStartupMessages({ + library(labeling,lib=\"#{rlib}\") library(iterators,lib=\"#{rlib}\") library(foreach,lib=\"#{rlib}\") library(ggplot2,lib=\"#{rlib}\") @@ -56,12 +57,14 @@ suppressPackageStartupMessages({ library(pls,lib=\"#{rlib}\") library(caret,lib=\"#{rlib}\") library(doMC,lib=\"#{rlib}\") + library(randomForest,lib=\"#{rlib}\") + library(plyr,lib=\"#{rlib}\") registerDoMC(#{NR_CORES}) }) " # OpenTox classes and includes -CLASSES = ["Feature","Compound","Dataset","Validation","CrossValidation","LeaveOneOutValidation","RepeatedCrossValidation","Experiment"]# Algorithm and Models are modules +CLASSES = ["Feature","Substance","Dataset","LazarPrediction","CrossValidation","LeaveOneOutValidation","RepeatedCrossValidation","Experiment"]# Algorithm and Models are modules [ # be aware of the require sequence as it affects class/method overwrites "overwrite.rb", @@ -70,15 +73,22 @@ CLASSES = ["Feature","Compound","Dataset","Validation","CrossValidation","LeaveO "opentox.rb", "feature.rb", "physchem.rb", + "substance.rb", "compound.rb", + "nanoparticle.rb", "dataset.rb", "algorithm.rb", + "similarity.rb", + "feature_selection.rb", "model.rb", "classification.rb", "regression.rb", + "caret.rb", + "validation-statistics.rb", "validation.rb", - "crossvalidation.rb", + "train-test-validation.rb", "leave-one-out-validation.rb", - "experiment.rb", + "crossvalidation.rb", + #"experiment.rb", + "import.rb", ].each{ |f| require_relative f } -OpenTox::PhysChem.descriptors # load descriptor features |