diff options
Diffstat (limited to 'lib/opentox-client.rb')
| -rw-r--r-- | lib/opentox-client.rb | 11 |
1 files changed, 5 insertions, 6 deletions
diff --git a/lib/opentox-client.rb b/lib/opentox-client.rb index 092b84e..e1e27c9 100644 --- a/lib/opentox-client.rb +++ b/lib/opentox-client.rb @@ -8,16 +8,16 @@ require 'mongoid' require 'rserve' # TODO store development/test, validation, production in separate databases -ENV["MONGOID_ENV"] = "development" +ENV["MONGOID_ENV"] ||= "development" Mongoid.load!("#{ENV['HOME']}/.opentox/config/mongoid.yml") R = Rserve::Connection.new -CLASSES = ["Feature","Compound", "Dataset"]#, "Validation", "Task", "Investigation"] +CLASSES = ["Feature","Compound", "Dataset", "Validation", "CrossValidation"]#, "Task", "Investigation"] #CLASSES = ["Feature", "Dataset", "Validation", "Task", "Investigation"] # Regular expressions for parsing classification data -TRUE_REGEXP = /^(true|active|1|1.0|tox|activating|carcinogen|mutagenic)$/i -FALSE_REGEXP = /^(false|inactive|0|0.0|low tox|deactivating|non-carcinogen|non-mutagenic)$/i +#TRUE_REGEXP = /^(true|active|1|1.0|tox|activating|carcinogen|mutagenic)$/i +#FALSE_REGEXP = /^(false|inactive|0|0.0|low tox|deactivating|non-carcinogen|non-mutagenic)$/i [ "overwrite.rb", @@ -49,5 +49,4 @@ $logger.level = Logger::DEBUG Mongo::Logger.level = Logger::WARN $mongo = Mongo::Client.new('mongodb://127.0.0.1:27017/opentox') $gridfs = $mongo.database.fs -Mongoid.logger.level = Logger::WARN -Mongoid.logger = $logger +#Mongoid.logger = $logger |